View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5901-Insertion-2 (Length: 1104)
Name: NF5901-Insertion-2
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5901-Insertion-2 |
 | |
|
| [»] chr3 (10 HSPs) |
| |
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Alignment Details
Target: chr3 (Bit Score: 1008; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1008; E-Value: 0
Query Start/End: Original strand, 8 - 1104
Target Start/End: Complemental strand, 48126055 - 48124956
Alignment:
| Q |
8 |
caccaaactatagtggaactggcatcaaaataatatcaactcgttgggtatcaatgtatcatattacttttctatagtttaatctcttgcaaggttcttg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48126055 |
caccaaactatagtggaactggcatcaaaataatatcaactcgttgggtatcaatgtatcatattacttttctatcgtttaatctcttgcaaggttcttg |
48125956 |
T |
|
| Q |
108 |
gtatcttgacaattaggtactgccactgatatcataattggactgcaaatttatttttctatatgtacacaatttccatctcagctttgtattttgtatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48125955 |
gtatcttgacaattaggtactgccactgatatcataattggactgcaaatttatttttttatatgtacacaatttccatctcagctttgtattttgtatt |
48125856 |
T |
|
| Q |
208 |
acttttctttgtcatatataactctgcaagttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactatg |
307 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48125855 |
actttt--ttgtcatatataactctgtaagttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaattctttggctagaaactatg |
48125758 |
T |
|
| Q |
308 |
tattttgtaacaagtttcaaggttct--gagtacgaaacttttgttcccttaccacatttagttcatattatgtttttgtttctctttgtttaacttcaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48125757 |
tattttgtaacaagtttcaaggttctatgagtacgaaacttttgttcccttaccacatttagttcatattatgtttttgtttctctttgtttaacttcaa |
48125658 |
T |
|
| Q |
406 |
attacatttcgcggtggaattctatagacttcatccgtgtttgaagtgcctaggaaactattattggctttagatattgtttgatgcacttactctcaaa |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48125657 |
attacatttcgcggtggaattctatagactacatccgtgtttgaagtgcctaggaaactattattggctttagatattgtttgatgcacttactctcaaa |
48125558 |
T |
|
| Q |
506 |
ttatgtagggaatagtcttttcttctcccaagagagatcccagtccagatatctaggaaatctggcacggccattgtgtgattcatctgaagctgaggaa |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48125557 |
ttatgtagggaatagtcttttcttctcccaagagagatcccagtccagatatctaggaaatttggcacggccattgtgtgattcatctgaagctgaggaa |
48125458 |
T |
|
| Q |
606 |
gcctcttatctcaaagaactttacgatcaaaatgatcccgaagctgtgatcctagcatttggaaggcagccatctctgcatacaaattctttggcatttt |
705 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48125457 |
gcctcttatctcaaaggactttacgatcaaaatgatcccgaagctgtgatcctagtatttgaaaggcagccatctctgcatacaaattctttggcatttt |
48125358 |
T |
|
| Q |
706 |
ctgaatatgttaaagcattagtaaaagttggtaggctggctgaaagtgagtttctaaagaccttgttaagaggcgagtatttggctaaaattgctcattt |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48125357 |
ctgaatatgttaaagcattagtaaaagttggtaggctggctgaaagtgagtttctaaagaccttgttaagaggcgagtatttggctaaaattgctcattt |
48125258 |
T |
|
| Q |
806 |
tcacttgactatgtttgcatgtgattatgctttgctctgtttgaccgttattttacgaaccttctagccttgctcagggaattaaggtttttcccctggc |
905 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48125257 |
tcacttgactgtgtttgcatgtgattatgctttgctctgtttgaccgttattttacgaaccttctagccttgctcaaggaattaaggtttttcccctggc |
48125158 |
T |
|
| Q |
906 |
taggaaaccagacctgtgcttgaagtgtttataatttgattagaaagctgagttaattgctattctgtccaattatggttgagccccaagtaaaaagact |
1005 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48125157 |
taggaaaccagacctgtgcttgaagtgtttataatttgattagaaagctgagttaattgctattctgtccaattatggttgagccccaagtaaaaagact |
48125058 |
T |
|
| Q |
1006 |
gaaggcacaggtctatatgcattgcatttagaatctcaacttg-tgaatgttatgatttgaggttaaacattgttac-aaatgcac-tgacataatcttt |
1102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
48125057 |
gaaggcacaggtctatatgcattgcatttagaatctcaacttgttgaatgttatgatttgaggttaaacattgttacaaaatgcacttgacataatcttt |
48124958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 508 - 961
Target Start/End: Complemental strand, 48115580 - 48115120
Alignment:
| Q |
508 |
atgtagggaatagtcttttcttctcccaagagagatcccagtccagatatctaggaaatctggcacggccattgtgtgattcatctgaagctgagga--- |
604 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||| ||| ||||| ||||||||||| ||||| || | | | |||||||||||||||||||||| |
|
|
| T |
48115580 |
atgtagggaataggcttctcttctcccaggagagatgccaatccagctatctaggaaacctggcccgacgactacgtgattcatctgaagctgaggagga |
48115481 |
T |
|
| Q |
605 |
agcctcttatctcaaagaactttacgatcaaaatgatcccgaagctgtgatcctagcatttggaaggcagccatctctgcatacaaattctttggcattt |
704 |
Q |
| |
|
|| |||||||||||||||||||||| || ||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||| |||| || |
|
|
| T |
48115480 |
agtctcttatctcaaagaactttaccgtcgaaatgatccggaagctgtgattagagcatttgaaagtcagccatctctgcatacaaattctgcggcactt |
48115381 |
T |
|
| Q |
705 |
tctgaatatgttaaagcattagtaaaagttggtaggctggctgaaagtgagtttctaaagaccttgttaagaggcgagtatttggctaaaattgctcatt |
804 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||||| ||||||||| || || |||| ||| |||||| || ||||| |||| || |||||||| |
|
|
| T |
48115380 |
tctgaatatgttaaagcattggtgaaagttgataggctggatgaaagtgaattactccagacattgagaagaggtgactattttgctagaactgctcatt |
48115281 |
T |
|
| Q |
805 |
ttcacttgactatgtttgcatgtgattatg------ctttgctctgtttgaccgttattttacgaaccttc-tagccttgctcagggaattaaggttttt |
897 |
Q |
| |
|
||| ||||||| ||||||||| |||| ||| |||| || ||||||||| |||||| | ||| | || ||| ||| |||||||||| ||| |
|
|
| T |
48115280 |
ttctcttgactgtgtttgcatttgatcatgcattgccttttctatgtttgaccaatattttgtggacccgcttaatctt-ttcaaggaattaagg--ttt |
48115184 |
T |
|
| Q |
898 |
cccctggctaggaaaccagacctgtgcttgaagtgtttataatttgattagaaagctgagttaa |
961 |
Q |
| |
|
|||||| |||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48115183 |
cccctgactagaaaaccagacatatgcttgaagtgttcataatttgattagaaagctgagttaa |
48115120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 507 - 1082
Target Start/End: Complemental strand, 48135655 - 48135074
Alignment:
| Q |
507 |
tatgtagggaatagtcttttcttctcccaagagagatcccagtccagatatctaggaaatctggcacggccattgtgtgattcatctgaagctgaggaag |
606 |
Q |
| |
|
||||||||| |||| |||||||||||||| | ||||||||||||||| ||||||| |||| || | | | | |||||||||||||||||| || || |
|
|
| T |
48135655 |
tatgtagggcataggcttttcttctcccaggggagatcccagtccagctatctagaaaatttgtcccaacgaccacgtgattcatctgaagctgcggcag |
48135556 |
T |
|
| Q |
607 |
cctcttatctcaaagaactttacgatcaaaatgatcccgaagctgtgatcctagcatttggaaggcagccatctctgcatacaaattctttggcattttc |
706 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| ||||| ||||| | ||||| || || ||||| |||||||||||||| | |||| |||| |
|
|
| T |
48135555 |
tctcttatctcaaagaactttaccttcgaaatgatcctgaagccgtgattagggaatttgagagtcatccatccctgcatacaaattcatcggcactttc |
48135456 |
T |
|
| Q |
707 |
tgaatatgttaaagcattagtaaaagttggtaggctggctgaaagtgagtttctaaagaccttgttaagaggcgagtatttggct--aaaattgctcatt |
804 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||||| ||||||||| || ||| |||| ||| |||||| || ||||||||| || || ||| || |
|
|
| T |
48135455 |
tcaatatgttaaagcattagtaaaagttgatatgctggatgaaagtgaattactagagactttgcaaagaggtgactatttggctggaattttactcttt |
48135356 |
T |
|
| Q |
805 |
ttcacttgactatgtttgcatgtgattatgctttgctctgtttgaccgttattttacgaaccttctagccttgctcagggaattaaggtttttcccctgg |
904 |
Q |
| |
|
||| ||||||| | ||| |||||||| |||| |||| ||||||||| || ||| | |||||||| ||||| | | ||||||||| ||| ||| | | |
|
|
| T |
48135355 |
ttctcttgactgtatttacatgtgatcgtgctctgctatgtttgaccaataatttgtggaccttctaaccttgttgaaggaattaagatttcccccattg |
48135256 |
T |
|
| Q |
905 |
cta-ggaaaccagacctgtgcttgaagtgtttataatttgattagaaagctga--gttaattgctattctgtccaattatggttgagccccaagtaaaaa |
1001 |
Q |
| |
|
| |||||| | || | |||| |||||||||| ||||||| |||| |||||| || || ||| || ||| || ||||||| |||| ||||||||| |
|
|
| T |
48135255 |
aaatggaaactatacatatgctcgaagtgtttacaatttgactagagagctgagtgtggcttactactcggtcttatcatggttgtgccctaagtaaaaa |
48135156 |
T |
|
| Q |
1002 |
gactgaaggcacaggtctatatgcattgcatttagaatctcaacttg-tgaatgttatgatttgaggttaaacattgttaca |
1082 |
Q |
| |
|
|||| ||||||| | ||| ||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
48135155 |
gactaaaggcacgattttatttgcattgcatttagaatcttaactcgctgagtgttatgatttgaggttaaacattgctaca |
48135074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 659 - 815
Target Start/End: Original strand, 48139523 - 48139679
Alignment:
| Q |
659 |
agcatttggaaggcagccatctctgcatacaaattctttggcattttctgaatatgttaaagcattagtaaaagttggtaggctggctgaaagtgagttt |
758 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| || ||| |
|
|
| T |
48139523 |
agcatttgaaagtcagccatctctccatacagattctttcacattttctgaatatgttaaagcattagtaaaagttgataggctggatgaaagcgaattt |
48139622 |
T |
|
| Q |
759 |
ctaaagaccttgttaagaggcgagtatttggctaaaattgctcattttcacttgact |
815 |
Q |
| |
|
|| ||||| || ||||||| || |||||||||| |||||||||||||| ||||||| |
|
|
| T |
48139623 |
ctgaagacttttctaagaggtgactatttggctagaattgctcattttctcttgact |
48139679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 237 - 381
Target Start/End: Original strand, 48139048 - 48139194
Alignment:
| Q |
237 |
gttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactatgtattttgtaacaagtttcaaggttct--g |
334 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||| ||| ||||||| || | | || |||||| |||| | | |
|
|
| T |
48139048 |
gttatttttgcagattgaaaggcgtcaatcggaatttggaaaggtcaaagatttattgactacaaactattcatctcggaataagtttgaaggctattca |
48139147 |
T |
|
| Q |
335 |
agtacgaaacttttgttcccttaccacatttagttcatattatgttt |
381 |
Q |
| |
|
|||| | || |||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
48139148 |
agtatggaaattttatccccttaccacatttagttcatgttatgttt |
48139194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1005 - 1084
Target Start/End: Original strand, 48139773 - 48139853
Alignment:
| Q |
1005 |
tgaaggcacaggtctatatgcattgcatttagaatctcaacttg-tgaatgttatgatttgaggttaaacattgttacaaa |
1084 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||| |||||| |
|
|
| T |
48139773 |
tgaaggcagagatctatttgcattgcatttagaatcttaacttgcttaatgttataatttggggttaaacattgctacaaa |
48139853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 442 - 535
Target Start/End: Original strand, 48139335 - 48139432
Alignment:
| Q |
442 |
gtgtttgaagtgcctaggaaactattattggctttagatattgtttgatgcacttactctcaaa-ttatgtaggg---aatagtcttttcttctccca |
535 |
Q |
| |
|
||||||||||| | | |||||||||||||||| |||||||||| ||| |||||||||| ||||| ||||| |||| ||||| |||||||||||||| |
|
|
| T |
48139335 |
gtgtttgaagtacttgggaaactattattggcgttagatattgcttgttgcacttactttcaaatttatgcagggaataataggcttttcttctccca |
48139432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 382
Target Start/End: Complemental strand, 48115818 - 48115614
Alignment:
| Q |
178 |
aatttccatctcagctttgtattttgtattacttttctttgtcatatataactctgcaagttatttttgcaggttgaaaggcgtcaatctgaatttagaa |
277 |
Q |
| |
|
|||||||||||| ||| | ||| ||||||||||||| || |||||||| | | | | |||||||||||||||||| ||| |||||| |||||| ||| |
|
|
| T |
48115818 |
aatttccatctctgctctatatcttgtattacttttattggtcatata--attttatagcttatttttgcaggttgaacggcatcaatcagaatttggaa |
48115721 |
T |
|
| Q |
278 |
aggtcaaaaatttattggctagaaactatgtattttgtaacaagtttcaaggttct--gagtacgaaacttttgttcccttaccacatttagttcatatt |
375 |
Q |
| |
|
| |||||| |||||| |||||| |||| ||| | ||| ||||||||||| | | |||||| | || ||||||| ||||| ||||||||| || || |
|
|
| T |
48115720 |
aagtcaaaggattattgactagaagctatttatctcctaataagtttcaaggctatacaagtacggatctgttgttcctttaccgcatttagtttatgtt |
48115621 |
T |
|
| Q |
376 |
atgtttt |
382 |
Q |
| |
|
||||||| |
|
|
| T |
48115620 |
atgtttt |
48115614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1032 - 1084
Target Start/End: Complemental strand, 48115065 - 48115012
Alignment:
| Q |
1032 |
tttagaatctcaacttg-tgaatgttatgatttgaggttaaacattgttacaaa |
1084 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
48115065 |
tttagaatctaaacttgctgagtgttatgatttgaggttgaacattgctacaaa |
48115012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 48135938 - 48135885
Alignment:
| Q |
241 |
tttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattg |
294 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
48135938 |
tttttgcaggttgaaagccgtcaattagaattcggaaaggtcaaagatttattg |
48135885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 442 - 1076
Target Start/End: Original strand, 32010606 - 32011235
Alignment:
| Q |
442 |
gtgtttgaagtgcctaggaaactattattggctttagatattgtttgatgcacttactctcaaatt-atgtagggaatagtcttttcttctcccaagaga |
540 |
Q |
| |
|
|||||||| || || || ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
32010606 |
gtgtttgatgtaccaagcaaactattattggctttagatattgcttgtggcacttactctcaaatttatgtagggaataggcttttcttctccc------ |
32010699 |
T |
|
| Q |
541 |
gatcccagtccagatatctaggaaatctggcacggccattgtgtgattcatctgaagctgaggaagcctcttatctcaaagaactttacgatcaaaatga |
640 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | | |||||||||||||| ||||||||||||| ||| ||||||||||||||| ||| ||| |
|
|
| T |
32010700 |
------agtccagatatctaggaaatctggcacgaccactacgcgattcatctgaagcagaggaagcctcttctcttaaagaactttacgatgaaattga |
32010793 |
T |
|
| Q |
641 |
tcccgaagctgtgatcctagcatttggaaggcagccatctctgcatacaaattctttggcattttctgaatatgttaaagcattagtaaaagttggtagg |
740 |
Q |
| |
|
||| ||||| ||||| ||||| || ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32010794 |
tcctgaagccgtgattagagcatatgaaagcaacccatctctgcataaaaattctttggcattttctgaatatgttaaagcattgataaaagttggtagg |
32010893 |
T |
|
| Q |
741 |
ctggctgaaagtgagtttctaaagaccttgttaagaggcgagtatttggctaaaattgctcattttcacttgactatgtttgcatgtgattatgctttgc |
840 |
Q |
| |
|
|| |||||||||| ||||| || || || ||||||| | ||| | |||| ||| |||| ||||| ||||||| | ||||||| ||||| |||||||| |
|
|
| T |
32010894 |
ctttctgaaagtgaatttctgaacactctgctaagaggtaattatcttgctagaatagctcgttttctcttgactgtatttgcatctgattgtgctttgc |
32010993 |
T |
|
| Q |
841 |
tctgtttgaccgttattttacgaaccttctagccttgctcagggaattaaggtttt-tcccctggctaggaaaccagacctgtgcttgaagtgtttata- |
938 |
Q |
| |
|
||||||||||| ||||||||| | ||||| || ||| ||||||||| |||| |||||| |||||||| |||| |||||||| |||||||| |
|
|
| T |
32010994 |
tctgtttgacc-atattttacggagattctaattctgttcaaggaattaagattttcccccctgattaggaaactagacacatgcttgaattgtttataa |
32011092 |
T |
|
| Q |
939 |
----atttgattagaaagctgagttaattgctattctgtccaattatggttgag-ccccaagtaaaaagactgaaggcacaggtctatatgcattgcatt |
1033 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | ||| ||||||| | ||||||||||||||||||||| ||||| ||||| |||||| |||| |
|
|
| T |
32011093 |
tttgatttgattagaaagctgaggtaattgctattctgcctaatcatggttgtgcccccaagtaaaaagactgaagacacagatctatttgcattacatt |
32011192 |
T |
|
| Q |
1034 |
tagaatctcaacttgtgaatgttatgatttgaggttaaacatt |
1076 |
Q |
| |
|
|||||||| | || ||| |||||| |||||||||| |||||| |
|
|
| T |
32011193 |
tagaatcttacctgctgagtgttattatttgaggttcaacatt |
32011235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 445 - 851
Target Start/End: Original strand, 32022439 - 32022835
Alignment:
| Q |
445 |
tttgaagtgcctaggaaactattattggctttagatattg-tttgatgcacttactctcaaatt-atgtagggaatagtcttttcttctcccaagagaga |
542 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||| |||||| | ||||| |
|
|
| T |
32022439 |
tttgatgtacctagaaaactattattggctttagatattgctttgatgcacttactttcaaatttatgtagagaataggcttttcatttccca------- |
32022531 |
T |
|
| Q |
543 |
tcccagtccagatatctaggaaatctggcacggccattgtgtgattcatctgaagctgaggaagcctcttatctcaaagaactttacgatcaaaatgatc |
642 |
Q |
| |
|
|||||| |||||||||||||||| || || | || | |||||||||||| ||| || || ||| || ||||||||||||||| ||||||||| |
|
|
| T |
32022532 |
-----gtccaggtatctaggaaatctggtccgaccgctatgcggttcatctgaagcagagaaatccacttctcctaaagaactttacgatgaaaatgatc |
32022626 |
T |
|
| Q |
643 |
ccgaagctgtgatcctagcatttggaaggcagccatctctgcatacaaattctttggcattttctgaatatgttaaagcattagtaaaagttggtaggct |
742 |
Q |
| |
|
| ||||| ||||| ||||||| ||| | || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32022627 |
ctgaagccgtgattagggcatttgaaagcaacccgtctcttcatacaaattatttggcattttctgaatatgttaaagcattagtaaaagttggtaggtt |
32022726 |
T |
|
| Q |
743 |
ggctgaaagtgagtttctaaagaccttgttaagaggcgagtatttggctaaaattgctcattttcacttgactatgtttgcatgtgattatgctttgctc |
842 |
Q |
| |
|
| |||||||||| ||||| || || ||| ||||||| | ||||||| || ||||||||| |||| |||| || ||||||||||||||| |||||||||| |
|
|
| T |
32022727 |
gtctgaaagtgaatttctgaaaactttgctaagaggtaactatttggttagaattgctcaatttctcttgtctgtgtttgcatgtgattgtgctttgctc |
32022826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 177 - 372
Target Start/End: Original strand, 32022238 - 32022433
Alignment:
| Q |
177 |
caatttccatctcagctttgtattttgtattacttttctttgtcatatataactctgcaagttatttttgcaggttgaaaggcgtcaatctgaatttaga |
276 |
Q |
| |
|
||||||||||||| ||| | ||| ||||||||||||| |||||||||| | || | |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32022238 |
caatttccatctctgctctatatcttgtattacttttatttgtcatatg-atct-tataagttatttttgcaggttgaaaggcgtcaatctgaattcgga |
32022335 |
T |
|
| Q |
277 |
aaggtcaaaaatttattggctagaaactatgtattttgtaacaagtttcaagg--ttctgagtacgaaacttttgttcccttaccacatttagttcat |
372 |
Q |
| |
|
||||||||| | |||||| |||||||||||||| | ||||||||| | || || |||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
32022336 |
aaggtcaaagaattattgagtagaaactatgtatctcacaacaagtttgagggctgtccaagtatgaaacttttgttcccttttcatatttagttcat |
32022433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 132 - 273
Target Start/End: Original strand, 32010237 - 32010375
Alignment:
| Q |
132 |
actgatatcataattggactgcaaatttatttttctatatgtacacaatttccatctcagctttgtattttgtattacttttctttgtcatatataactc |
231 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||| ||||||| |||||| ||||| || ||||| ||||||| ||||| |||||||||| | || |
|
|
| T |
32010237 |
actggtatcatgattgaactgcaaatttattttt-tatatgtttctaatttctatctctgcactgtatattgtattccttttatttgtcatatc-atct- |
32010333 |
T |
|
| Q |
232 |
tgcaagttatttttgcaggttgaaaggcgtcaatctgaattt |
273 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32010334 |
tataagttatttttgcaggttgaaaggcgtcaatctgaattt |
32010375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 4e-53; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 507 - 1082
Target Start/End: Complemental strand, 25246049 - 25245475
Alignment:
| Q |
507 |
tatgtagggaatagtcttttcttctcccaagagagatcccagtccagatatctaggaaatctggcacggccattgtgtgattcatctgaagctgaggaag |
606 |
Q |
| |
|
||||||||| |||| |||||||||||||| | ||||||||||||||| ||||||| || | | | | | |||||||||||||||||| | || |
|
|
| T |
25246049 |
tatgtagggcataggcttttcttctcccaggggagatcccagtccagctatctag------tgtcccaacgactacgtgattcatctgaagctgcagcag |
25245956 |
T |
|
| Q |
607 |
cctcttatctcaaagaactttacgatcaaaatgatcccgaagctgtgatcctagcatttggaaggcagccatctctgcatacaaattctttggcattttc |
706 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| ||||| ||||| | ||||| || || ||||| |||||||||||||| | |||| |||| |
|
|
| T |
25245955 |
tctcttatctcaaagaactttaccttcgaaatgatcctgaagccgtgattagggaatttgagagtcatccatccctgcatacaaattcatcggcactttc |
25245856 |
T |
|
| Q |
707 |
tgaatatgttaaagcattagtaaaagttggtaggctggctgaaagtgagtttctaaagaccttgttaagaggcgagtatttggct--aaaattgctcatt |
804 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||||| ||||||||| || ||| |||| ||| |||||| || ||||||||| || || ||| || |
|
|
| T |
25245855 |
tcaatatgttaaagcattagtaaaagttgataagctggatgaaagtgaattactagagactttgcaaagaggtgactatttggctggaattttactcttt |
25245756 |
T |
|
| Q |
805 |
ttcacttgactatgtttgcatgtgattatgctttgctctgtttgaccgttattttacgaaccttctagccttgctcagggaattaaggtttttcccctgg |
904 |
Q |
| |
|
||| ||||||| | ||| |||||||| |||| |||| ||||||||| || ||| | |||||||| ||||| | | ||||||||| ||| ||| | | |
|
|
| T |
25245755 |
ttctcttgactgtatttacatgtgatcgtgctctgctatgtttgaccaataatttgtggaccttctaaccttgttgaaggaattaagatttcccccattg |
25245656 |
T |
|
| Q |
905 |
cta-ggaaaccagacctgtgcttgaagtgtttataatttgattagaaagctgagt-taattgctattctgtccaattatggttgagccccaagtaaaaag |
1002 |
Q |
| |
|
| |||||| | || | |||| |||||||||| |||||||||||| |||||||| | | ||| || ||| || ||||||| |||| |||||||||| |
|
|
| T |
25245655 |
aaatggaaactatacatatgctcgaagtgtttacaatttgattagagagctgagtgtggctactactcggtcttatcatggttgtgccctaagtaaaaag |
25245556 |
T |
|
| Q |
1003 |
actgaaggcacaggtctatatgcattgcatttagaatctcaacttg-tgaatgttatgatttgaggttaaacattgttaca |
1082 |
Q |
| |
|
||| |||||||| | ||| ||||||||||||||||| | |||| | ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
25245555 |
actaaaggcacaattttatttgcattgcatttagaattttaactcgttgagtgttatgatttgaggttaaacattgctaca |
25245475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 659 - 857
Target Start/End: Original strand, 25252195 - 25252389
Alignment:
| Q |
659 |
agcatttggaaggcagccatctctgcatacaaattctttggcattttctgaatatgttaaagcattagtaaaagttggtaggctggctgaaagtgagttt |
758 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| ||||||| ||||||| |||||||||||||||||||||||| |||| |||||||| |||||| || ||| |
|
|
| T |
25252195 |
agcatttgaaagtcagccatctctccatacagattctttcgcattttttgaatatgttaaagcattagtaaacgttgataggctggatgaaagcgaattt |
25252294 |
T |
|
| Q |
759 |
ctaaagaccttgttaagaggcgagtatttggctaaaattgctcattttcacttgactatgtttgcatgtgattatgctttgctctgtttgaccgttatt |
857 |
Q |
| |
|
|| ||||| || ||||||| || |||||||||| |||||||||||||| |||||| | ||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
25252295 |
ctgaagacttttctaagaggtgactatttggctagaattgctcattttctcttgac----tgtgcatgtgattgttgtttgctctgtttgaccattatt |
25252389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 25251722 - 25251791
Alignment:
| Q |
237 |
gttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactat |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||| ||| ||||||| |
|
|
| T |
25251722 |
gttatttttgcagattgaaaggcgtcaatccgaatttggaaaggtcaaagatttattgactacaaactat |
25251791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 442 - 535
Target Start/End: Original strand, 25252007 - 25252104
Alignment:
| Q |
442 |
gtgtttgaagtgcctaggaaactattattggctttagatattgtttgatgcacttactctcaaa-ttatgtaggg---aatagtcttttcttctccca |
535 |
Q |
| |
|
||||||||||| | | ||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||| |||| ||||| |||||||||||||| |
|
|
| T |
25252007 |
gtgtttgaagtacttgggaaactattattggctttagatattgcttgctgcacttactttcaaatttatgcagggaataataggcttttcttctccca |
25252104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 25247916 - 25247863
Alignment:
| Q |
241 |
tttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattg |
294 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
25247916 |
tttttgcaggttgaaagccgtcaattagaattcggaaaggtcaaagatttattg |
25247863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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