View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5901-Insertion-4 (Length: 1012)

Name: NF5901-Insertion-4
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5901-Insertion-4
NF5901-Insertion-4
[»] chr7 (16 HSPs)
chr7 (6-244)||(27398169-27398406)
chr7 (609-714)||(27396078-27396183)
chr7 (841-972)||(46691848-46691982)
chr7 (839-897)||(1039064-1039122)
chr7 (237-318)||(27397024-27397100)
chr7 (839-897)||(30655599-30655657)
chr7 (846-999)||(33320674-33320825)
chr7 (843-897)||(36615808-36615862)
chr7 (839-897)||(42598059-42598117)
chr7 (847-983)||(49035862-49036002)
chr7 (310-350)||(27396588-27396628)
chr7 (841-897)||(31424775-31424831)
chr7 (781-819)||(27395973-27396011)
chr7 (839-892)||(32679023-32679076)
chr7 (845-897)||(22197745-22197797)
chr7 (845-897)||(22240024-22240076)
[»] chr8 (10 HSPs)
chr8 (842-978)||(40930834-40930968)
chr8 (846-897)||(25829272-25829323)
chr8 (839-897)||(13959220-13959278)
chr8 (841-978)||(5200485-5200622)
chr8 (843-978)||(38086419-38086558)
chr8 (841-999)||(24200625-24200780)
chr8 (841-893)||(22839331-22839383)
chr8 (839-890)||(584136-584187)
chr8 (839-875)||(7845135-7845171)
chr8 (841-884)||(30836131-30836174)
[»] chr2 (5 HSPs)
chr2 (842-971)||(41419617-41419748)
chr2 (839-896)||(38908743-38908800)
chr2 (842-897)||(14732344-14732399)
chr2 (841-895)||(22649068-22649122)
chr2 (851-897)||(41378216-41378262)
[»] chr1 (10 HSPs)
chr1 (846-983)||(42442015-42442154)
chr1 (841-971)||(12172954-12173083)
chr1 (841-954)||(19472815-19472929)
chr1 (845-999)||(26384932-26385087)
chr1 (841-897)||(26990674-26990730)
chr1 (841-897)||(38548750-38548806)
chr1 (841-884)||(28447805-28447848)
chr1 (842-896)||(31833965-31834019)
chr1 (845-897)||(8462976-8463028)
chr1 (851-897)||(46757379-46757425)
[»] chr3 (11 HSPs)
chr3 (841-971)||(31525363-31525492)
chr3 (843-897)||(28934741-28934795)
chr3 (842-897)||(10454357-10454412)
chr3 (841-897)||(43073049-43073105)
chr3 (846-958)||(47820911-47821026)
chr3 (841-897)||(52076138-52076194)
chr3 (839-958)||(28956959-28957079)
chr3 (842-897)||(44656229-44656284)
chr3 (843-896)||(20701222-20701275)
chr3 (841-958)||(9358752-9358869)
chr3 (839-972)||(8431419-8431550)
[»] chr6 (7 HSPs)
chr6 (839-955)||(11546782-11546898)
chr6 (846-976)||(34761155-34761287)
chr6 (841-897)||(6575798-6575854)
chr6 (841-890)||(33112718-33112767)
chr6 (845-884)||(10246996-10247035)
chr6 (906-978)||(15859086-15859160)
chr6 (912-978)||(33984746-33984813)
[»] chr5 (6 HSPs)
chr5 (846-983)||(23172981-23173119)
chr5 (846-897)||(9931804-9931855)
chr5 (844-897)||(22887284-22887337)
chr5 (841-884)||(9597757-9597800)
chr5 (844-896)||(25539896-25539947)
chr5 (839-956)||(10431072-10431191)
[»] chr4 (7 HSPs)
chr4 (841-978)||(32183268-32183410)
chr4 (841-897)||(15186984-15187040)
chr4 (841-897)||(25641272-25641328)
chr4 (842-897)||(16572143-16572198)
chr4 (843-890)||(16662312-16662359)
chr4 (841-896)||(47571574-47571629)
chr4 (843-877)||(45511407-45511441)
[»] scaffold0209 (1 HSPs)
scaffold0209 (839-890)||(12896-12947)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 27398406 - 27398169
Alignment:
Q  6 caaagtactcatataaagtagacatgggaatgagttaaagaggcaagaaagggatttattcgagtaataacttccagccttgttcattacatgctactat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27398406 caaagtactcatataaagtagacatgggaatgagttaaagaggcaagaaagggatttattcgagtaataacttccagccttgttcattacatgctactat 27398307  T
Q  106 atactttggttcattgctaaagcaaagaaccgacaattaatggccaaatcacaaatttaacccaagcttatgacatgaatggagaaaaagcatacaattg 205  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  27398306 atcctttggttcattgctaaagcaaagaaccgacaattaatggccaaatcacaaatttaacccaagcttatgacatg-atggagaaaaagcatccaattg 27398208  T
Q  206 ggtctaaaatgatgcatctgtacatgaatcactattaag 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27398207 ggtctaaaatgatgcatctgtacatgaatcactattaag 27398169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 609 - 714
Target Start/End: Complemental strand, 27396183 - 27396078
Alignment:
Q  609 atacgacattaattattctgttatctataatgtccatgatcgtcttaattaatttgaagactttattctaatcttaaaaattgaacccctaataaaaaga 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27396183 atacgacattaattattctgttatctataatgtccatgatcgtcttaaataatttgaagactttattctaatcttaaaaattgaacccctaataaaaaga 27396084  T
Q  709 agtacc 714  Q
    ||||||    
T  27396083 agtacc 27396078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 841 - 972
Target Start/End: Original strand, 46691848 - 46691982
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg---nnnnnnntacaaataaggggaaatcggttgctatacaatc 937  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||          |||| | ||||||||||||||||| | | || |    
T  46691848 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgccacataaac 46691947  T
Q  938 accgattcgaacaaaaacccccgaaaaaccacccc 972  Q
    ||||  |||||||||||||||  ||||||||||||    
T  46691948 accggctcgaacaaaaaccccttaaaaaccacccc 46691982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 839 - 897
Target Start/End: Original strand, 1039064 - 1039122
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1039064 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtgg 1039122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 27397100 - 27397024
Alignment:
Q  237 ctattaagttttagggcttgctaataagtgtcaacagtcttcttagaaaaaagaaagaaaacaagtgtcacaatttatttta 318  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||  ||| |||||||||||||||||||||||||    
T  27397100 ctattaagttttagggcttgctaataagtgtcaacag---tcttagaaaaa--aaaaaaaacaagtgtcacaatttatttta 27397024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 839 - 897
Target Start/End: Original strand, 30655599 - 30655657
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||    
T  30655599 aacggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtgg 30655657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 846 - 999
Target Start/End: Complemental strand, 33320825 - 33320674
Alignment:
Q  846 aaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnntacaaataaggggaaatcggttgctatacaatcaccgattc 945  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||||||        | ||| |||||||||| ||||||  ||||| |||||  ||    
T  33320825 aaatattgttaaccaacaagcccgtgcaagaagcactaataagctcgggtgggaaa----aaaaacaaggggaaattggttgccttacaaacaccggctc 33320730  T
Q  946 gaacaaaaacccc-cgaaaaaccacccctaaacacaggatca-acctaaaagagta 999  Q
    |||||||| ||||   |||||||||| ||||||| |||| || |||||||||||||    
T  33320729 gaacaaaacccccttaaaaaaccaccactaaacaaaggaacacacctaaaagagta 33320674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 843 - 897
Target Start/End: Original strand, 36615808 - 36615862
Alignment:
Q  843 gcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    |||||||||||||| || |||||||||||||||||||||||| ||||||||||||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtgg 36615862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 839 - 897
Target Start/End: Complemental strand, 42598117 - 42598059
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||    
T  42598117 aacggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtgg 42598059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 847 - 983
Target Start/End: Original strand, 49035862 - 49036002
Alignment:
Q  847 aatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg---nnnnnnntacaaataaggggaaatcggttgctatacaatcaccgat 943  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||||||||          |||||| ||||||||||||||||| | | || ||||| |    
T  49035862 aatattattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggt 49035961  T
Q  944 tcgaacaaaaacccc-cgaaaaaccacccctaaacacagga 983  Q
    |||||||||||||||   ||||||||||| |||||| ||||    
T  49035962 tcgaacaaaaaccccttaaaaaaccacccataaacaaagga 49036002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 27396628 - 27396588
Alignment:
Q  310 tttattttatataagaaaaacatcaatgtttgttaaggaac 350  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27396628 tttattttatataagaaaaacatcaatgtttgttaaggaac 27396588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 841 - 897
Target Start/End: Original strand, 31424775 - 31424831
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||||||| |||| |||||||||||| |||||| ||||| ||||||    
T  31424775 cggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtgg 31424831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 781 - 819
Target Start/End: Complemental strand, 27396011 - 27395973
Alignment:
Q  781 gttacatagcatgtcatattttaattcaaaaactgaaat 819  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  27396011 gttacatagcatgtcatattttaattcagaaactgaaat 27395973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 839 - 892
Target Start/End: Complemental strand, 32679076 - 32679023
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcg 892  Q
    |||||| |||| ||||||||| |||||||||||||||| ||||||| |||||||    
T  32679076 aacggctaaattttattaaccaacaagcccgtgcaagacgcactaataagctcg 32679023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 845 - 897
Target Start/End: Complemental strand, 22197797 - 22197745
Alignment:
Q  845 aaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||| ||||| |||||||||  ||||||| ||||||||||||    
T  22197797 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgg 22197745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 845 - 897
Target Start/End: Original strand, 22240024 - 22240076
Alignment:
Q  845 aaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||| ||||| |||||||||  ||||||| ||||||||||||    
T  22240024 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgg 22240076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 842 - 978
Target Start/End: Original strand, 40930834 - 40930968
Alignment:
Q  842 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnntacaaataaggggaaatcggttgctatacaatcaccg 941  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||       |||||| ||||||||||||||||    |||| || ||    
T  40930834 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaatacaaacaaggggaaatcggttg--tcacaaacaacg 40930931  T
Q  942 attcgaacaaaaacccccgaaaaaccacccctaaaca 978  Q
      |||||||||||| ||  ||||||||||||||||||    
T  40930932 gctcgaacaaaaactccttaaaaaccacccctaaaca 40930968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 846 - 897
Target Start/End: Original strand, 25829272 - 25829323
Alignment:
Q  846 aaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  25829272 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 25829323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 839 - 897
Target Start/End: Original strand, 13959220 - 13959278
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    |||||||||||||||||| || |||||||||||||||||||| ||| ||||||||||||    
T  13959220 aacggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtgg 13959278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 978
Target Start/End: Original strand, 5200485 - 5200622
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnntacaaataaggggaaatcggttgctatacaatcacc 940  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||| ||| | ||||||        ||| | ||||| |||||||||||   |||| ||||    
T  5200485 cggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaaaacatacaagggaaaatcggttgccgcacaaacacc 5200584  T
Q  941 gattcgaacaaaaacccccgaaaaaccacccctaaaca 978  Q
    |  |||||||||||||||  ||||| ||||||||||||    
T  5200585 ggctcgaacaaaaaccccttaaaaatcacccctaaaca 5200622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 843 - 978
Target Start/End: Original strand, 38086419 - 38086558
Alignment:
Q  843 gcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtg--gnnnnnnntacaaataaggggaaatcggttgctatacaatcacc 940  Q
    ||||||||||||||||| | |||||||||||||| ||||||| |||||||||||  |       |||||| ||||| ||||||||||| |||||| | |     
T  38086419 gcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccatacaaactct 38086518  T
Q  941 gattcgaacaaaaacccc--cgaaaaaccacccctaaaca 978  Q
    |  |||||||||||||||    ||||||||||||||||||    
T  38086519 ggctcgaacaaaaacccctttaaaaaaccacccctaaaca 38086558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 841 - 999
Target Start/End: Original strand, 24200625 - 24200780
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnntacaaataaggggaaatcggttgctatacaatcacc 940  Q
    ||||||||||||||||| | ||||| |||||||||||||||||| ||||| ||||||        ||| | |||||||||||||||||   | || ||||    
T  24200625 cggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtggaaaaaaa-acatacaaggggaaatcggttgccgcaaaaacacc 24200723  T
Q  941 gattcgaacaaaaacccccgaaaaaccacccctaaacacaggatcaacctaaaagagta 999  Q
    |  ||||||||||| | |  |||||||||||||||||| |||| ||||| |||||||||    
T  24200724 ggctcgaacaaaaa-cacttaaaaaccacccctaaacaaaggaacaacc-aaaagagta 24200780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 841 - 893
Target Start/End: Complemental strand, 22839383 - 22839331
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgg 893  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||    
T  22839383 cggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcgg 22839331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 839 - 890
Target Start/End: Original strand, 584136 - 584187
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagct 890  Q
    |||||||||||||||||| || |||||||||| ||||||||||||| |||||    
T  584136 aacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 839 - 875
Target Start/End: Complemental strand, 7845171 - 7845135
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaag 875  Q
    ||||||||||||||||||||| |||||||||||||||    
T  7845171 aacggcaaaatattattaaccaacaagcccgtgcaag 7845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 841 - 884
Target Start/End: Original strand, 30836131 - 30836174
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaa 884  Q
    ||||||||||||||||||| |||||| ||||| |||||||||||    
T  30836131 cggcaaaatattattaaccaacaagctcgtgcgagaagcactaa 30836174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 842 - 971
Target Start/End: Complemental strand, 41419748 - 41419617
Alignment:
Q  842 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnntacaaat--aaggggaaatcggttgctatacaatcac 939  Q
    |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||        ||||||  ||||||||||||||||| |||  | |||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  940 cgattcgaacaaaaacccccgaaaaaccaccc 971  Q
    ||| |||||||||||||||  |||||||||||    
T  41419648 cgactcgaacaaaaaccccttaaaaaccaccc 41419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 839 - 896
Target Start/End: Complemental strand, 38908800 - 38908743
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtg 896  Q
    ||||||||||||||||||||| | ||| |||||||||| ||||||| |||||||||||    
T  38908800 aacggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtg 38908743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 842 - 897
Target Start/End: Original strand, 14732344 - 14732399
Alignment:
Q  842 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    |||||||||||||||||| |||||||||||| ||  ||||||| ||||||||||||    
T  14732344 ggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgg 14732399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 841 - 895
Target Start/End: Original strand, 22649068 - 22649122
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggt 895  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||| ||||| ||||    
T  22649068 cggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggt 22649122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 851 - 897
Target Start/End: Original strand, 41378216 - 41378262
Alignment:
Q  851 ttattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||| ||||||||||| |||| ||||||| ||||||||||||    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtgg 41378262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 846 - 983
Target Start/End: Original strand, 42442015 - 42442154
Alignment:
Q  846 aaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtg--gnnnnnnntacaaataaggggaaatcggttgctatacaatcaccgat 943  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||||||||          |||||| || |||||||||||||| ||  || ||||||     
T  42442015 aaatattattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaacaccgac 42442114  T
Q  944 tcgaacaaaaacccccgaaaaaccacccctaaacacagga 983  Q
    |||||||||||||||  |||||||||||||||||| ||||    
T  42442115 tcgaacaaaaaccccttaaaaaccacccctaaacaaagga 42442154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 841 - 971
Target Start/End: Complemental strand, 12173083 - 12172954
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnntacaaataaggggaaatcggttgctatacaatcacc 940  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||        ||||| ||||||||||||||||| | |||| || |    
T  12173083 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtggaaaaaaa-acaaacaaggggaaatcggttgccacacaaacatc 12172985  T
Q  941 gattcgaacaaaaacccccgaaaaaccaccc 971  Q
       |||||||||||||||  |||||||||||    
T  12172984 agctcgaacaaaaaccccttaaaaaccaccc 12172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 841 - 954
Target Start/End: Complemental strand, 19472929 - 19472815
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg-nnnnnnntacaaataaggggaaatcggttgctatacaatcac 939  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||        |||||| ||||||||||| ||||| |||||| | |    
T  19472929 cggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgccatacaaactc 19472830  T
Q  940 cgattcgaacaaaaa 954  Q
    ||  |||||||||||    
T  19472829 cggctcgaacaaaaa 19472815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 845 - 999
Target Start/End: Complemental strand, 26385087 - 26384932
Alignment:
Q  845 aaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnn--tacaaataaggggaaatcggttgctatacaatcaccga 942  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||| ||||||         |||||| || |||||||||||||  |||||| ||||      
T  26385087 aaaatattattaaccgacaagcccgt-caagaagcgctaataagcttgggtggaaaaaaaaatacaaacaaagggaaatcggttgtcatacaaacaccag 26384989  T
Q  943 ttcgaacaaaaacccccgaaaaaccacccctaaacacaggatcaacctaaaagagta 999  Q
     || ||||||| ||||  |||||||||||||||| | |||| |||||||||||||||    
T  26384988 ctcaaacaaaacccccttaaaaaccacccctaaagaaaggaacaacctaaaagagta 26384932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 897
Target Start/End: Complemental strand, 26990730 - 26990674
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||||    
T  26990730 cggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtgg 26990674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 897
Target Start/End: Complemental strand, 38548806 - 38548750
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||    
T  38548806 cggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgg 38548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 841 - 884
Target Start/End: Complemental strand, 28447848 - 28447805
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaa 884  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  28447848 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaa 28447805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 842 - 896
Target Start/End: Complemental strand, 31834019 - 31833965
Alignment:
Q  842 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtg 896  Q
    |||||||||||||||||| ||||  |||||||||| |||||||||||||||||||    
T  31834019 ggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtg 31833965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 845 - 897
Target Start/End: Original strand, 8462976 - 8463028
Alignment:
Q  845 aaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||| |||||| |||||||||||||||||  |||||||||||    
T  8462976 aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtgg 8463028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 851 - 897
Target Start/End: Complemental strand, 46757425 - 46757379
Alignment:
Q  851 ttattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||| |||||||||||||||| ||||||| |||||| |||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtgg 46757379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 841 - 971
Target Start/End: Complemental strand, 31525492 - 31525363
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnntacaaataaggggaaatcggttgctatacaatcacc 940  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||        ||||| ||||||||||||||||| | |||| || |    
T  31525492 cggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaaa-acaaacaaggggaaatcggttgccacacaaacaac 31525394  T
Q  941 gattcgaacaaaaacccccgaaaaaccaccc 971  Q
    |  |||||||||||||||  |||||||||||    
T  31525393 ggctcgaacaaaaaccccttaaaaaccaccc 31525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 843 - 897
Target Start/End: Original strand, 28934741 - 28934795
Alignment:
Q  843 gcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  28934741 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 28934795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 842 - 897
Target Start/End: Complemental strand, 10454412 - 10454357
Alignment:
Q  842 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||    
T  10454412 ggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgg 10454357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 897
Target Start/End: Original strand, 43073049 - 43073105
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||||||    
T  43073049 cggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgg 43073105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 846 - 958
Target Start/End: Complemental strand, 47821026 - 47820911
Alignment:
Q  846 aaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggt---ggnnnnnnntacaaataaggggaaatcggttgctatacaatcaccga 942  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||||||||   ||       |||||| |||||||||||||||||   |||| |||||     
T  47821026 aaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccgg 47820927  T
Q  943 ttcgaacaaaaacccc 958  Q
     |||||||||||||||    
T  47820926 ctcgaacaaaaacccc 47820911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 897
Target Start/End: Complemental strand, 52076194 - 52076138
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||    
T  52076194 cggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 52076138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 839 - 958
Target Start/End: Complemental strand, 28957079 - 28956959
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtg-gnnnnnnntacaaataaggggaaatcggttgctatacaatc 937  Q
    |||| |||||||||||||||| ||||| ||||||||||| |||| | ||||||||||| |        ||||| ||||||||||||||||| | |||| |    
T  28957079 aacgacaaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaac 28956980  T
Q  938 accgattcgaacaaaaacccc 958  Q
    ||||  |||||||||||||||    
T  28956979 accggctcgaacaaaaacccc 28956959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 842 - 897
Target Start/End: Original strand, 44656229 - 44656284
Alignment:
Q  842 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    |||||||||||||||||| |||||||||||||||| |||| || ||||||||||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtgg 44656284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 843 - 896
Target Start/End: Complemental strand, 20701275 - 20701222
Alignment:
Q  843 gcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtg 896  Q
    ||||||||||||||||| || ||||||| ||||||||||||| |||||||||||    
T  20701275 gcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtg 20701222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 841 - 958
Target Start/End: Original strand, 9358752 - 9358869
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnntacaaataaggggaaatcggttgctatacaatcacc 940  Q
    |||||||||||||||| || |||||||||||| ||||| ||||| ||||| ||||||        ||| | |||||||||||||||||   |||| ||||    
T  9358752 cggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaacatagaaggggaaatcggttgccgcacaaacacc 9358851  T
Q  941 gattcgaacaaaaacccc 958  Q
    |  |||||||||||||||    
T  9358852 ggctcgaacaaaaacccc 9358869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 839 - 972
Target Start/End: Original strand, 8431419 - 8431550
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnntacaaataaggggaaatcggttgctatacaatca 938  Q
    ||||||||||||||||| | | | |||||||||||||| |||||||||||||||| |||       || | | ||||||||||||||||| | | || ||    
T  8431419 aacggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatgg-aaaaaataaacacaaggggaaatcggttgcaaca-aaaca 8431516  T
Q  939 ccgattcgaacaaaaacccccgaaaaaccacccc 972  Q
    |||  |||||||||||||||  ||||||||||||    
T  8431517 ccggctcgaacaaaaaccccttaaaaaccacccc 8431550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 7e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 839 - 955
Target Start/End: Complemental strand, 11546898 - 11546782
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtggnnnnnnntacaaataaggggaaatcggttgctatacaatca 938  Q
    |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||         ||||| |||| |||||||||||  |||||| ||    
T  11546898 aacggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggtgagaaaaaaaacaaagaaggagaaatcggttgtcatacaaaca 11546799  T
Q  939 ccgattcgaacaaaaac 955  Q
    |||  ||||||||||||    
T  11546798 ccggctcgaacaaaaac 11546782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 846 - 976
Target Start/End: Complemental strand, 34761287 - 34761155
Alignment:
Q  846 aaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggt-ggnnnnnnntacaaataaggggaaatcggttgctatacaatcaccgatt 944  Q
    |||||||||||| ||||||||||||||||| |||||||| |||||||||| ||       |||||| |||  |||||||||||  |||||| |||||| |    
T  34761287 aaatattattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaaaatacaaagaagaagaaatcggttgtcatacaaacaccgact 34761188  T
Q  945 cgaacaaaaac-ccccgaaaaaccacccctaaa 976  Q
    ||||||||||| ||   ||||||||||||||||    
T  34761187 cgaacaaaaactccttaaaaaaccacccctaaa 34761155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 897
Target Start/End: Complemental strand, 6575854 - 6575798
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||    
T  6575854 cggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtgg 6575798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 841 - 890
Target Start/End: Original strand, 33112718 - 33112767
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagct 890  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  33112718 cggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagct 33112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 845 - 884
Target Start/End: Complemental strand, 10247035 - 10246996
Alignment:
Q  845 aaaatattattaaccgacaagcccgtgcaagaagcactaa 884  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  10247035 aaaatattattaaccaacaagcccgtgcaagaagcactaa 10246996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 906 - 978
Target Start/End: Complemental strand, 15859160 - 15859086
Alignment:
Q  906 acaaataaggggaaatcggttgctatacaatcaccgattcgaacaaaaacccc--cgaaaaaccacccctaaaca 978  Q
    ||||| ||||||||||||||||| | |||| |||||  |||||||||||||||    ||||||||||||||||||    
T  15859160 acaaagaaggggaaatcggttgccaaacaaacaccggctcgaacaaaaacccctttaaaaaaccacccctaaaca 15859086  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 978
Target Start/End: Complemental strand, 33984813 - 33984746
Alignment:
Q  912 aaggggaaatcggttgctatacaatcaccgattcgaacaaaaacccc-cgaaaaaccacccctaaaca 978  Q
    ||||||||||||||||| |||||| ||| | ||||||||||||||||   ||||||||||| ||||||    
T  33984813 aaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccacccataaaca 33984746  T

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Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 846 - 983
Target Start/End: Original strand, 23172981 - 23173119
Alignment:
Q  846 aaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg-nnnnnnntacaaataaggggaaatcggttgctatacaatcaccgatt 944  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||        |||||| |||| |||||| |||||  || || |||||  |    
T  23172981 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggct 23173080  T
Q  945 cgaacaaaaacccccgaaaaaccacccctaaacacagga 983  Q
    ||||||||| ||||  ||||||||||| |||||| ||||    
T  23173081 cgaacaaaacccccttaaaaaccacccataaacaaagga 23173119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 846 - 897
Target Start/End: Original strand, 9931804 - 9931855
Alignment:
Q  846 aaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  9931804 aaatattattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgg 9931855  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 844 - 897
Target Start/End: Complemental strand, 22887337 - 22887284
Alignment:
Q  844 caaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    |||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 22887284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 841 - 884
Target Start/End: Original strand, 9597757 - 9597800
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaa 884  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||    
T  9597757 cggcaaaatattattaaccaacaagcctgtgcaagaagcactaa 9597800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 844 - 896
Target Start/End: Complemental strand, 25539947 - 25539896
Alignment:
Q  844 caaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtg 896  Q
    ||||||||||||| || |||||||||||||||||||| ||| |||||||||||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtg 25539896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 839 - 956
Target Start/End: Complemental strand, 10431191 - 10431072
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtg--gnnnnnnntacaaataaggggaaatcggttgctatacaat 936  Q
    ||||| ||||||||||||| | |||| ||||||||||||||| ||| ||| |||||||  |        ||||| |||| |||||||||||| | ||||     
T  10431191 aacggaaaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaaaaaaacaaacaaggagaaatcggttgccacacaaa 10431092  T
Q  937 caccgattcgaacaaaaacc 956  Q
    |||||| |||||||||||||    
T  10431091 caccgactcgaacaaaaacc 10431072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 841 - 978
Target Start/End: Complemental strand, 32183410 - 32183268
Alignment:
Q  841 cggcaaaatattattaaccga-caagcccgtgcaagaagcactaacaagctcgggtggnnnnnnnta--caaataaggggaaatcggttgctatacaatc 937  Q
    ||||||||||||||||||| | ||||||||||||||  ||||||| ||||||||||||        |  |||| ||||||||||||||||| |||||| |    
T  32183410 cggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatcggttgccatacaaac 32183311  T
Q  938 accgattcgaacaaaaacccc--cgaaaaaccacccctaaaca 978  Q
    ||||  |||||||||||||||    ||||||||||||||||||    
T  32183310 accggctcgaacaaaaacccctttaaaaaaccacccctaaaca 32183268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 897
Target Start/End: Original strand, 15186984 - 15187040
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||||||    
T  15186984 cggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgg 15187040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 897
Target Start/End: Original strand, 25641272 - 25641328
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  25641272 cggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtgg 25641328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 842 - 897
Target Start/End: Complemental strand, 16572198 - 16572143
Alignment:
Q  842 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtgg 897  Q
    |||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 16572143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 843 - 890
Target Start/End: Original strand, 16662312 - 16662359
Alignment:
Q  843 gcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagct 890  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  16662312 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagct 16662359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 841 - 896
Target Start/End: Original strand, 47571574 - 47571629
Alignment:
Q  841 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagctcgggtg 896  Q
    ||||||||||||||||||| |||| |||||| ||| |||||||| |||||||||||    
T  47571574 cggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtg 47571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 843 - 877
Target Start/End: Original strand, 45511407 - 45511441
Alignment:
Q  843 gcaaaatattattaaccgacaagcccgtgcaagaa 877  Q
    ||||||||||||||||| |||||||||||||||||    
T  45511407 gcaaaatattattaaccaacaagcccgtgcaagaa 45511441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 839 - 890
Target Start/End: Original strand, 12896 - 12947
Alignment:
Q  839 aacggcaaaatattattaaccgacaagcccgtgcaagaagcactaacaagct 890  Q
    |||||||||||||||||| || |||||||||| ||||||||||||| |||||    
T  12896 aacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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