View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5901-Insertion-5 (Length: 635)
Name: NF5901-Insertion-5
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5901-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 8 - 635
Target Start/End: Complemental strand, 2090408 - 2089781
Alignment:
| Q |
8 |
caagaaatattatagacacatgcaatgggttattcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcat |
107 |
Q |
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| T |
2090408 |
caagaaatattatagacacatgcaatgggttattcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcat |
2090309 |
T |
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| Q |
108 |
gaatcctataagaaaacaatgtgtggctattttgaagccttctggacaattttttggaggaaattcatatgctgctctggcatatgacccttcagaatct |
207 |
Q |
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| T |
2090308 |
gaatcctataagaaaacaatgtgtggctattttgaagccttctggacaattttttggaggaaattcatatgctgctctggtatatgacccttcagaatct |
2090209 |
T |
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| Q |
208 |
tggttctttaagattgtacatttccaagatcatggccatattaacattttctcctctatgactggcctttggacgaccttgactatcaattttcttcaat |
307 |
Q |
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| T |
2090208 |
tggttcttcaagattgtacattttcaggatcatggccatattaatattttctcctctatgaccggcctttggacgaccttgactatcaattttcttcaat |
2090109 |
T |
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| Q |
308 |
atatcaatgagtcttactgggtcagaaaatcgatttatctaaaaggatctatttaccgactctcctgttcaggacaatatttattgaaaattaaagttga |
407 |
Q |
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| T |
2090108 |
atatcaatgagtcttactgggtcaggaaatcggtttatctaaaaggatctatttaccgactctcctgttcaggacaatatttattgaaaattaaagttga |
2090009 |
T |
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| Q |
408 |
tcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgtgtttttgataattgtcaaagggagataaatctaaaagatggcaag |
507 |
Q |
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| T |
2090008 |
tcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgtgtttttgataattgtcaaagggagataaatctaaaagatggcaag |
2089909 |
T |
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| Q |
508 |
atcttattggtctcatttagaggtgtaaattttgtttgttttgaactcgttgaatgtgttacaatgggtgttagctcttatacatggcacacaattcatc |
607 |
Q |
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| T |
2089908 |
atcttattggtctcatttagaggtgtaaattttgtttgttttgaactcgttgaatgtgttacaatgggtgttagctcttatacatggcacacaattcatc |
2089809 |
T |
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| Q |
608 |
gaaaagtgaataggaagttgttgattct |
635 |
Q |
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| T |
2089808 |
gaaaagtgaataggaagttgttgattct |
2089781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 23 - 462
Target Start/End: Original strand, 2878944 - 2879380
Alignment:
| Q |
23 |
acacatgcaatgggttattcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaa |
122 |
Q |
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| T |
2878944 |
acacatgcaatggcttactattgttttgccacaatgatggtgaggctaccaacatcttgcgtggtgtctattattactatgtcctgaatccagtcacaaa |
2879043 |
T |
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| Q |
123 |
acaatgtgtggctattttgaagccttctggacaattttttggaggaaattcatatgctgctctggcatatgacccttcagaatcttggttctttaagatt |
222 |
Q |
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| T |
2879044 |
acaatgtgtgactgttatgaagcccataggacaaacctctggtgggtattcatatgctgctctggcatatgaccctgcagaatcttggtttttcaagatt |
2879143 |
T |
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| Q |
223 |
gtacatttccaagatcatggccatattaacattttctcctctatgactggcctttggacgaccttgactatcaattttcttcaatatatcaatgagtctt |
322 |
Q |
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| T |
2879144 |
gtgcgttttcagggtcttcgtcatgtgaacattttctcctccgtgactggtaattggacgacattgaatattagtttgccagattacatttacgagtctg |
2879243 |
T |
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| Q |
323 |
actgggtcagaaaatcgatttatctaaaaggatctatttaccgactctcctgttcaggacaatatttattgaaaattaaagttgatcctcaagagaatgc |
422 |
Q |
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| T |
2879244 |
attggataaaaaaatcaatttattttaaagggtctatttatcggctcaccaagtcgggg---tatttagtgaaaattaaagttgatcctcaggagaatgt |
2879340 |
T |
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| Q |
423 |
ctcgaatcaagctgagataataacacttcatcctgattgt |
462 |
Q |
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||| ||||||||||| |||||||||| ||||||| |||| |
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| T |
2879341 |
ttcggatcaagctgaggtaataacactacatcctggttgt |
2879380 |
T |
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