View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5901-Insertion-8 (Length: 242)
Name: NF5901-Insertion-8
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5901-Insertion-8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 40466070 - 40466255
Alignment:
| Q |
55 |
tattgtattattcatgatgataaaataaggaaaatgnnnnnnnnnnttcaaaagtagtaataattaccaattcttttccaagttcaatagcagcatcctt |
154 |
Q |
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| T |
40466070 |
tattgtattattcatgatgataaaataaggaaaatgaaaaaaaa--ttcaaaagtagtaataattaccaattcttttccaagttcaatagcagcatcctt |
40466167 |
T |
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| Q |
155 |
atagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttgataccttcatttccatctctctctccata |
242 |
Q |
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| T |
40466168 |
atagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttgataccttcatttctatctctctctccata |
40466255 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 21624111 - 21624013
Alignment:
| Q |
117 |
attaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttgat |
215 |
Q |
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| T |
21624111 |
attaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttgat |
21624013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 28271927 - 28272022
Alignment:
| Q |
119 |
taccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttga |
214 |
Q |
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| T |
28271927 |
taccaattcatttccaagttcaatggcagcatcttgataactacttttcttgccaggactacttccacaaaagacacaaaccctcttgaactttga |
28272022 |
T |
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