View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5901_high_3 (Length: 540)
Name: NF5901_high_3
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5901_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 59 - 468
Target Start/End: Complemental strand, 44563909 - 44563499
Alignment:
| Q |
59 |
aatatgatactcatacaattagcttcatttccaagcattattttattcattatacttgcttctttagatttgcttcttccattatccaatactattattt |
158 |
Q |
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| T |
44563909 |
aatatgatactcatacaattagcttcatttccaagcattattttattcattatacttgcttctttagatttgcttcttccattatccaatactattattt |
44563810 |
T |
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| Q |
159 |
aatatactttgttatttcatttctcctatacta-nnnnnnnataatttcatcataaaattccagtaattgttggatctcataagtaacatatttagattc |
257 |
Q |
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| T |
44563809 |
aatatactttgttatttcatttctcctatactattttttttataatttcatcataaaattccagtaattgttggatctcataagtaacatatttagattc |
44563710 |
T |
|
| Q |
258 |
gtgttgttggatttgtgatttttcaaactattgttattcactttactctctaaaaatctcacctattgnnnnnnnnnnnnnggattgcatcaaactcaat |
357 |
Q |
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| T |
44563709 |
gtgttgttggatttgtgatttttcaaactattattattcactttactctctaaaaatctcacctactgttttttcttttttggattgcatcaaactcaat |
44563610 |
T |
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| Q |
358 |
aactcagattgggtttatttatgtaagtaaattattgatttttatgttgttgttctcttgttcttgttgattttaaacttggaatacactttgatcttca |
457 |
Q |
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| T |
44563609 |
aactcagattgggtttatttatgtaagtaaattattgatttttatgttgttgttctcttgttcttgttgattttaaacttggaatacactttgatcttca |
44563510 |
T |
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| Q |
458 |
atacattgcaa |
468 |
Q |
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| T |
44563509 |
atacattgcaa |
44563499 |
T |
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Back To:
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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 406
Target Start/End: Complemental strand, 7691217 - 7691150
Alignment:
| Q |
339 |
ggattgcatcaaactcaataactcagattgggtttatttatgtaagtaaattattgatttttatgttg |
406 |
Q |
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| T |
7691217 |
ggattccatcatactcaatagctcagattgggtttatttatgtgagttagtaattgattttgatgttg |
7691150 |
T |
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