View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5901_high_5 (Length: 417)

Name: NF5901_high_5
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5901_high_5
NF5901_high_5
[»] chr6 (15 HSPs)
chr6 (16-417)||(33285599-33286000)
chr6 (145-390)||(33057577-33057822)
chr6 (131-372)||(33304510-33304751)
chr6 (131-375)||(33399077-33399321)
chr6 (165-395)||(31562596-31562826)
chr6 (138-375)||(33644288-33644525)
chr6 (159-375)||(33358890-33359106)
chr6 (131-395)||(33388163-33388427)
chr6 (143-367)||(33410036-33410260)
chr6 (145-392)||(33262632-33262879)
chr6 (145-360)||(9166790-9167005)
chr6 (179-358)||(33271865-33272044)
chr6 (234-366)||(28870013-28870145)
chr6 (137-201)||(28869950-28870014)
chr6 (100-132)||(9167087-9167119)
[»] chr2 (1 HSPs)
chr2 (148-366)||(17440638-17440856)
[»] scaffold1408 (2 HSPs)
scaffold1408 (157-396)||(649-888)
scaffold1408 (16-52)||(1071-1107)
[»] scaffold0428 (2 HSPs)
scaffold0428 (157-396)||(6395-6634)
scaffold0428 (16-52)||(6817-6853)
[»] chr4 (7 HSPs)
chr4 (235-365)||(31157250-31157380)
chr4 (212-362)||(31498870-31499020)
chr4 (227-365)||(31504015-31504153)
chr4 (212-365)||(31148336-31148489)
chr4 (212-365)||(31478815-31478968)
chr4 (262-358)||(31472410-31472506)
chr4 (255-312)||(31017634-31017691)
[»] chr7 (1 HSPs)
chr7 (243-357)||(6785240-6785354)


Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 33286000 - 33285599
Alignment:
Q  16 atattcggtctaagctctcttaaatatctatatatgtggaactgtcgcaaagcgtttaccaatcaaagggatctgaagaacccggatataagtgaaagtg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33286000 atattcggtctaagctctcttaaatatctatatatgtggaactgtcacaaagcgtttaccaatcaaagggatttgaagaacccggatataagtgaaagtg 33285901  T
Q  116 catcacattctcgatcatatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33285900 catcacattctcgatcatatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgc 33285801  T
Q  216 aattgaatgtttatattggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaat 315  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33285800 aattgaatgtttatattggctagaaatattaaacttagggggaaacaattttgtgacactacctagcctgagaaagctgtccaaacttgtatatttaaat 33285701  T
Q  316 ttggagcattgcaagttgttggaatctttgcctcaacttccttttcctaccaatattggggaggatcatcgtgagaacaacaacaagtttcatgaccttt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33285700 ttggagcattgcaagttgttggaatctttgcctcaacttccttttcctaccaatattggggaggatcatcgtgagaacaacaacaagtttcatgaccttt 33285601  T
Q  416 tt 417  Q
    ||    
T  33285600 tt 33285599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 145 - 390
Target Start/End: Complemental strand, 33057822 - 33057577
Alignment:
Q  145 tccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatat 244  Q
    ||||||||||| |||| |||||||||| | ||| |||| |||||||||  ||||||||| ||| |  ||||||||||||||||| |||||||||||| ||    
T  33057822 tccttgcatagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatgcaattgaatgtttacattggctagaaagat 33057723  T
Q  245 taaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatcttt 344  Q
    |||| | || ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33057722 taaatttagcgggaaacgattttgtgacattacctagcctgaggaagctatccaaacttgtatatttaaatttggagcattgcaaattgttggaatcttt 33057623  T
Q  345 gcctcaacttccttttcctaccaatattggggaggatcatcgtgag 390  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||    
T  33057622 gcctcaacttccttttcctaccaatactggggaggttcatcgtgag 33057577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 33304751 - 33304510
Alignment:
Q  131 catatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttata 230  Q
    ||||| ||||| |||||||||||||||||  ||||||||| || ||| ||||||||||||||| ||||||||||||  |  |||||||||||||||||||    
T  33304751 catatttgttgccatccttgcatagcttagtttgtttgcgagacgttgacattagcttttgccatctaagccaagttcctgatgcaattgaatgtttata 33304652  T
Q  231 ttggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaag 330  Q
     | |||||||| |||||||| || |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |    
T  33304651 ctcgctagaaagattaaacttagagggaaacaattttgtgactctacctagcctgaggaagctttccaaacttgtatatttaaatttgcagcattgcatg 33304552  T
Q  331 ttgttggaatctttgcctcaacttccttttcctaccaatatt 372  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  33304551 ttgttggaatctttgcctcaacttccttctcctaccaatatt 33304510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 131 - 375
Target Start/End: Complemental strand, 33399321 - 33399077
Alignment:
Q  131 catatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttata 230  Q
    ||||| ||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||  ||||||||||||  |  |||||||||||  |||| |    
T  33399321 catatttgttgccatccttgcatagcttagattgtttgcgtggagttgacattagcttttgcaatctaagccaagttcctgatgcaattgaagatttaca 33399222  T
Q  231 ttggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaag 330  Q
    ||||||||||| |||||| | |  ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||    
T  33399221 ttggctagaaagattaaatttaaagggaaacaattttgtgacactacctagcctgaggaagctttccgaacttgtatatttaaatttggaacactgcaag 33399122  T
Q  331 ttgttggaatctttgcctcaacttccttttcctaccaatattggg 375  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||    
T  33399121 ttgttggaatctttgcctcaacttccttcccctaccactattggg 33399077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 165 - 395
Target Start/End: Original strand, 31562596 - 31562826
Alignment:
Q  165 tttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaat 264  Q
    |||||||  |||| ||||||||||||||||||||||||||||| |  |||||||||||||||||   | |||||||| |||||| | |||||||||| ||    
T  31562596 tttgcgtacagttgacattagcttttgccgtctaagccaagtgcctgatgcaattgaatgtttaagctcgctagaaagattaaatttagggggaaactat 31562695  T
Q  265 tttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgcctcaacttccttttccta 364  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  31562696 tttgtgacactacctagcttgtggaagctttccaaacttgtatatttaaatttggagcattgcgagttgttggaatctttgcctcaacttccttctccta 31562795  T
Q  365 ccaatattggggaggatcatcgtgagaacaa 395  Q
    ||| |||||||  ||||| ||||||||||||    
T  31562796 ccactattgggcgggatcgtcgtgagaacaa 31562826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 138 - 375
Target Start/End: Original strand, 33644288 - 33644525
Alignment:
Q  138 gttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggcta 237  Q
    |||| |||||||||||||||||||||||||||||    || ||||||||| ||||||||||||||| ||  |  || |||||||||||||| ||| ||||    
T  33644288 gttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgcta 33644387  T
Q  238 gaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttgg 337  Q
    |||| |||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||    
T  33644388 gaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttgg 33644487  T
Q  338 aatctttgcctcaacttccttttcctaccaatattggg 375  Q
    |||||||||||||||||||||  ||||||| |||||||    
T  33644488 aatctttgcctcaacttccttcccctaccactattggg 33644525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 159 - 375
Target Start/End: Complemental strand, 33359106 - 33358890
Alignment:
Q  159 atattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaaactaaggggga 258  Q
    ||||||||||||||  |||  | |||| ||||||| |||||| |||||  |  ||||||||||||||||| ||||||||||||||||||| | |||||||    
T  33359106 atattgtttgcgtgttgttgcctttagtttttgccatctaagtcaagttcccgatgcaattgaatgtttacattggctagaaatattaaatttaggggga 33359007  T
Q  259 aacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgcctcaacttcctt 358  Q
    ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33359006 aacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcaacttcctt 33358907  T
Q  359 ttcctaccaatattggg 375  Q
    ||||||||| |||||||    
T  33358906 ttcctaccactattggg 33358890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 131 - 395
Target Start/End: Complemental strand, 33388427 - 33388163
Alignment:
Q  131 catatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttata 230  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||| | |||||  |||||  |  || |||||||||||||| |    
T  33388427 catatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttaca 33388328  T
Q  231 ttggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaag 330  Q
     |  ||||||| |||||| | |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  33388327 ctcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaag 33388228  T
Q  331 ttgttggaatctttgcctcaacttccttttcctaccaatattggggaggatcatcgtgagaacaa 395  Q
    || ||| ||||||| ||||||||||||| || ||||| |||||||  ||||||||||||||||||    
T  33388227 ttcttgaaatcttttcctcaacttccttctcttaccactattgggcgggatcatcgtgagaacaa 33388163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 143 - 367
Target Start/End: Complemental strand, 33410260 - 33410036
Alignment:
Q  143 catccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaat 242  Q
    |||| |||||||||||||||||||||||| ||||| | ||||||||||||| ||||| ||||||  |  ||||||||||| ||||| ||| ||||||||     
T  33410260 catcattgcatagcttatattgtttgcgtcaagttgatattagcttttgccatctaaaccaagttcctgatgcaattgaaggtttacattcgctagaaag 33410161  T
Q  243 attaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatct 342  Q
    |||| | | || ||||||| |||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  33410160 attatatttagcgggaaactattttgtgacactacctagcttgaggaagctttccaaacttgaatatttagatttgcagcattgcaagttgttggaatct 33410061  T
Q  343 ttgcctcaacttccttttcctacca 367  Q
    |||||||||||||||||||||||||    
T  33410060 ttgcctcaacttccttttcctacca 33410036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 145 - 392
Target Start/End: Complemental strand, 33262879 - 33262632
Alignment:
Q  145 tccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatat 244  Q
    ||||||| ||| ||| ||||||||||| | ||| |||| |||||||||  |||| |||||||| |     |||||||||| ||| |||||||||||| ||    
T  33262879 tccttgcgtagtttacattgtttgcgtaatgttgacataagcttttgctatctacgccaagtgcctggcacaattgaatgcttacattggctagaaagat 33262780  T
Q  245 taaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatcttt 344  Q
    |||| | |||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33262779 taaatttagggggaaatgattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttggaatcttt 33262680  T
Q  345 gcctcaacttccttttcctaccaatattggggaggatcatcgtgagaa 392  Q
    |||||||||||||| |||||||  |||||||  |||||||||||||||    
T  33262679 gcctcaacttccttctcctacctctattgggcgggatcatcgtgagaa 33262632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 145 - 360
Target Start/End: Complemental strand, 9167005 - 9166790
Alignment:
Q  145 tccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatat 244  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||| ||||| |||||||||| || |  || ||||||||||||||   |||||||||| ||    
T  9167005 tccttgcgtagtttatattgtttgcgtgaagttgacattagctattgccatctaagccaattgcctgatacaattgaatgtttacggtggctagaaagat 9166906  T
Q  245 taaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatcttt 344  Q
    |||||| |||||||| | |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | |||    
T  9166905 taaacttagggggaatcgattttgcgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttggagttttt 9166806  T
Q  345 gcctcaacttcctttt 360  Q
    ||||||||||||||||    
T  9166805 gcctcaacttcctttt 9166790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 179 - 358
Target Start/End: Complemental strand, 33272044 - 33271865
Alignment:
Q  179 acattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaattttgtgacactacc 278  Q
    ||||||||||||||| |||| |||||||  |  ||||||||||||||||| |||||||||||| |||| | | |||||||||||||||||||||||||||    
T  33272044 acattagcttttgccatctacgccaagttcctgatgcaattgaatgtttacattggctagaaagattagatttagggggaaacaattttgtgacactacc 33271945  T
Q  279 tagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgcctcaacttcctt 358  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  33271944 tagcctgaggaagctttccaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcgacttcctt 33271865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 234 - 366
Target Start/End: Original strand, 28870013 - 28870145
Alignment:
Q  234 gctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttg 333  Q
    |||||||| |||||||| | |||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  28870013 gctagaaagattaaacttacggggaaactattttgtgacactgcctagcctgaggaagctttccaaacttgaatatttaaatttggagcattgcaagttg 28870112  T
Q  334 ttggaatctttgcctcaacttccttttcctacc 366  Q
    || |||||||||||||||||||||| |||||||    
T  28870113 tttgaatctttgcctcaacttccttctcctacc 28870145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 28869950 - 28870014
Alignment:
Q  137 tgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagc 201  Q
    ||||| |||||||| ||||||||||||||||| || | ||| || |||||||||||| |||||||    
T  28869950 tgttgccatccttgaatagcttatattgtttgtgtaacgttgacgttagcttttgccatctaagc 28870014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 9167119 - 9167087
Alignment:
Q  100 gatataagtgaaagtgcatcacattctcgatca 132  Q
    |||||||||||||||||||||||||| ||||||    
T  9167119 gatataagtgaaagtgcatcacattcccgatca 9167087  T

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Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 148 - 366
Target Start/End: Original strand, 17440638 - 17440856
Alignment:
Q  148 ttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaa 247  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |  || |||||||||||||| ||||| |||||| |||||    
T  17440638 ttgcatagcttatattgtttgcgtgaagttgacattagtttttgccgtctaagccaagtgccggatacaattgaatgtttacattgggtagaaagattaa 17440737  T
Q  248 actaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgcc 347  Q
    | | |||||||||  |||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17440738 atttagggggaaatgattttgcgacactacctagcctgaggaagctttcgaaacttgtatatttaaatttgcagcattgcaagttgttggaatctttgcc 17440837  T
Q  348 tcaacttccttttcctacc 366  Q
    |||||||||||||||||||    
T  17440838 tcaacttccttttcctacc 17440856  T

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Target: scaffold1408 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 157 - 396
Target Start/End: Complemental strand, 888 - 649
Alignment:
Q  157 ttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaaactaagggg 256  Q
    ||||||||||||||| |  || ||||||||||||||| ||||||||| ||  |  ||||||||||||||||| || ||||||||| |||||| | |||||    
T  888 ttatattgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggg 789  T
Q  257 gaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgcctcaacttcc 356  Q
    |||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  788 gaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttggaatcgttgcctcaacttcc 689  T
Q  357 ttttcctaccaatattggggaggatcatcgtgagaacaac 396  Q
    |||||| | || |||||||  |||| ||| ||||||||||    
T  688 ttttccaagcactattgggccggattatcatgagaacaac 649  T

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Target: scaffold1408; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 1107 - 1071
Alignment:
Q  16 atattcggtctaagctctcttaaatatctatatatgt 52  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  1107 atattcggtcttagctctcttaaatatctaaatatgt 1071  T

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Target: scaffold0428 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 157 - 396
Target Start/End: Complemental strand, 6634 - 6395
Alignment:
Q  157 ttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaaactaagggg 256  Q
    ||||||||||||||| |  || ||||||||||||||| ||||||||| ||  |  ||||||||||||||||| || ||||||||| |||||| | |||||    
T  6634 ttatattgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggg 6535  T
Q  257 gaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgcctcaacttcc 356  Q
    |||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6534 gaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttggaatcgttgcctcaacttcc 6435  T
Q  357 ttttcctaccaatattggggaggatcatcgtgagaacaac 396  Q
    |||||| | || |||||||  |||| ||| ||||||||||    
T  6434 ttttccaagcactattgggccggattatcatgagaacaac 6395  T

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Target: scaffold0428; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 6853 - 6817
Alignment:
Q  16 atattcggtctaagctctcttaaatatctatatatgt 52  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  6853 atattcggtcttagctctcttaaatatctaaatatgt 6817  T

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Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 31157380 - 31157250
Alignment:
Q  235 ctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgt 334  Q
    ||||||| ||||||   |||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||| | |    
T  31157380 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagggagctttccaaacttgtatatttaaacttggagcattgcaagcttt 31157281  T
Q  335 tggaatctttgcctcaacttccttttcctac 365  Q
    |||||||||||||||||||||||||||||||    
T  31157280 tggaatctttgcctcaacttccttttcctac 31157250  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 212 - 362
Target Start/End: Original strand, 31498870 - 31499020
Alignment:
Q  212 atgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatattt 311  Q
    ||||||||| ||||||| ||||| |||||   ||||| | |||||||||||| ||||||||| |||||||||||||| | || ||||||||||||| |||    
T  31498870 atgcaattggatgtttacattggttagaagagttaaatttagggggaaacaagtttgtgacattacctagcctgagggacctttccaaacttgtatgttt 31498969  T
Q  312 aaatttggagcattgcaagttgttggaatctttgcctcaacttccttttcc 362  Q
    ||| || || |||||||| ||||||||||||||||||||||||||||||||    
T  31498970 aaacttagaacattgcaaattgttggaatctttgcctcaacttccttttcc 31499020  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 227 - 365
Target Start/End: Original strand, 31504015 - 31504153
Alignment:
Q  227 tatattggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattg 326  Q
    |||||||| |||||   ||||||| ||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||||    
T  31504015 tatattggttagaatatttaaacttagggggaaataattttgtgacagtacctagcctgagggagctttccaaacttgtatatttaaacttggagcattg 31504114  T
Q  327 caagttgttggaatctttgcctcaacttccttttcctac 365  Q
    |||  |||||||||||||||||   ||||||| ||||||    
T  31504115 caaactgttggaatctttgcctgttcttccttctcctac 31504153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 212 - 365
Target Start/End: Complemental strand, 31148489 - 31148336
Alignment:
Q  212 atgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatattt 311  Q
    ||||||||| | |||||  ||||||||||| ||||||   |||||||||||||||||||||  |||||||||| |||||||| |||| ||||| ||||||    
T  31148489 atgcaattggacgtttacgttggctagaaagattaaatctagggggaaacaattttgtgacggtacctagccttaggaagctatccagacttgcatattt 31148390  T
Q  312 aaatttggagcattgcaagttgttggaatctttgcctcaacttccttttcctac 365  Q
    ||| ||| ||||||| ||||||||| |||| |||||||||||||||||| ||||    
T  31148389 aaacttgcagcattgtaagttgttgaaatcgttgcctcaacttccttttgctac 31148336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 212 - 365
Target Start/End: Original strand, 31478815 - 31478968
Alignment:
Q  212 atgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatattt 311  Q
    ||||||||| |||| |||||||| |||||  |||||| | |||||||||||||||||||||| ||||||| |||||| |||| || ||||||||||||||    
T  31478815 atgcaattggatgtctatattggttagaagcattaaatttagggggaaacaattttgtgacagtacctagtctgagggagctttcaaaacttgtatattt 31478914  T
Q  312 aaatttggagcattgcaagttgttggaatctttgcctcaacttccttttcctac 365  Q
    ||  || |||||||||||| ||||| |||||||||||  |||||||| ||||||    
T  31478915 aagcttagagcattgcaagctgttgaaatctttgcctgtacttccttctcctac 31478968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 358
Target Start/End: Original strand, 31472410 - 31472506
Alignment:
Q  262 aattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgcctcaacttcctt 358  Q
    |||||||||||| ||||||||| |||| |||| |||||||||||||||||||| || || ||| ||  |  |||| ||||||||||| |||||||||    
T  31472410 aattttgtgacagtacctagcccgagggagctttccaaacttgtatatttaaacttagaacatcgcccgcagttgaaatctttgcctaaacttcctt 31472506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 31017691 - 31017634
Alignment:
Q  255 gggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatattta 312  Q
    |||||||||||||||||| || ||||| || ||| |||| || |||||||||||||||    
T  31017691 gggaaacaattttgtgactctgcctagtctcagggagctttctaaacttgtatattta 31017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 357
Target Start/End: Original strand, 6785240 - 6785354
Alignment:
Q  243 attaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatct 342  Q
    |||||| | |||||||||| ||||||||||| | |||||||||| | |||| |||||||| ||||||||||| ||||| || |||||||||||| ||| |    
T  6785240 attaaatttagggggaaaccattttgtgacattgcctagcctgaaggagctttccaaactcgtatatttaaacttggatcactgcaagttgttgaaatat 6785339  T
Q  343 ttgcctcaacttcct 357  Q
    |||||| | ||||||    
T  6785340 ttgcctgatcttcct 6785354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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