View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5901_high_7 (Length: 279)

Name: NF5901_high_7
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5901_high_7
NF5901_high_7
[»] chr2 (6 HSPs)
chr2 (13-271)||(3675256-3675514)
chr2 (217-255)||(5738536-5738574)
chr2 (76-155)||(36031041-36031120)
chr2 (222-255)||(10132696-10132729)
chr2 (1-45)||(3675467-3675511)
chr2 (36-80)||(21428924-21428968)
[»] chr3 (3 HSPs)
chr3 (159-250)||(40140999-40141090)
chr3 (217-256)||(26634787-26634826)
chr3 (217-246)||(52017637-52017666)
[»] chr5 (5 HSPs)
chr5 (78-155)||(40553595-40553672)
chr5 (186-256)||(27719562-27719632)
chr5 (189-257)||(31594630-31594698)
chr5 (32-81)||(421793-421842)
chr5 (164-255)||(4854279-4854368)
[»] chr7 (2 HSPs)
chr7 (13-80)||(2886248-2886315)
chr7 (13-79)||(19568607-19568673)
[»] chr1 (3 HSPs)
chr1 (31-81)||(32478737-32478787)
chr1 (176-249)||(42803096-42803169)
chr1 (212-252)||(6774303-6774343)
[»] chr6 (2 HSPs)
chr6 (212-248)||(32576199-32576235)
chr6 (225-255)||(18813282-18813312)
[»] chr4 (4 HSPs)
chr4 (123-243)||(41571454-41571575)
chr4 (212-255)||(42403349-42403392)
chr4 (225-255)||(48249630-48249660)
chr4 (31-95)||(8430562-8430627)
[»] chr8 (2 HSPs)
chr8 (220-255)||(37080232-37080267)
chr8 (36-80)||(33726458-33726502)
[»] scaffold0050 (1 HSPs)
scaffold0050 (67-144)||(58108-58185)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 3675256 - 3675514
Alignment:
Q  13 gaataaaccataaatatagtccctaaactatcacactcccaccaatttagtccttaaactataaaaatctatcaatttagtccttgaagtatataaaaat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3675256 gaataaaccataaatatagtccctaaactatcacactcccaccaatttagtccttaaactataaaaatctatcagtttagtccttgaagtatataaaaat 3675355  T
Q  113 ttgtcagttcagtccctaacatcttaatagcagggactgaatttacatttcatatactataaggactatttactatatttatatagtttagaggtaaagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675356 ttgtcagttcagtccctaacatcttaatagcagggactgaatttacatttcatatactataaggactatttactatatttatatagtttagaggtaaagt 3675455  T
Q  213 tggagagagaatgatagtttagggactaaattgatgatttatttggatattgatgatgt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675456 tggagagagaatgatagtttagggactaaattgatgatttatttggatattgatgatgt 3675514  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 5738574 - 5738536
Alignment:
Q  217 gagagaatgatagtttagggactaaattgatgatttatt 255  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  5738574 gagagaatgatagtttagggactaaattgatggtttatt 5738536  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 36031041 - 36031120
Alignment:
Q  76 aaaatctatcaatttagtccttgaagtatataaaaatttgtcagttcagtccctaacatcttaatagcagggactgaatt 155  Q
    |||||| ||||||||||||| | |||||||| ||||   |||| || ||| |||||||||||||||||| ||||| ||||    
T  36031041 aaaatccatcaatttagtccctaaagtatatgaaaaacagtcaatttagttcctaacatcttaatagcatggactaaatt 36031120  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 10132696 - 10132729
Alignment:
Q  222 aatgatagtttagggactaaattgatgatttatt 255  Q
    ||||||||||||||||||||||||||| ||||||    
T  10132696 aatgatagtttagggactaaattgatggtttatt 10132729  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3675511 - 3675467
Alignment:
Q  1 tcatcaatatccgaataaaccataaatatagtccctaaactatca 45  Q
    |||||||||||| |||||| ||| ||| |||||||||||||||||    
T  3675511 tcatcaatatccaaataaatcatcaatttagtccctaaactatca 3675467  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 21428968 - 21428924
Alignment:
Q  36 taaactatcacactcccaccaatttagtccttaaactataaaaat 80  Q
    ||||||||||| ||| | |||||||||||| ||||||||||||||    
T  21428968 taaactatcactctcacgccaatttagtccctaaactataaaaat 21428924  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 40140999 - 40141090
Alignment:
Q  159 atttcatatactataaggactatttactatatttatatagtttagaggtaaagttggagagagaatgatagtttagggactaaattgatgat 250  Q
    |||||||||||| |||| |||| ||| |||||||||||||||||| ||| || ||||||||||| ||||| ||   ||||||||||||||||    
T  40140999 atttcatatactttaagaactacttaatatatttatatagtttaggggttaaattggagagagagtgatacttggtggactaaattgatgat 40141090  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 26634787 - 26634826
Alignment:
Q  217 gagagaatgatagtttagggactaaattgatgatttattt 256  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  26634787 gagagagtgatagtttagggactaaattaatgatttattt 26634826  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 52017666 - 52017637
Alignment:
Q  217 gagagaatgatagtttagggactaaattga 246  Q
    ||||||||||||||||||||||||||||||    
T  52017666 gagagaatgatagtttagggactaaattga 52017637  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 40553672 - 40553595
Alignment:
Q  78 aatctatcaatttagtccttgaagtatataaaaatttgtcagttcagtccctaacatcttaatagcagggactgaatt 155  Q
    |||||||||||||||||| |  ||||| | ||| || ||||||| ||||||||||||||||||| |||||||||||||    
T  40553672 aatctatcaatttagtccctttagtatttgaaacttcgtcagtttagtccctaacatcttaatatcagggactgaatt 40553595  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 27719632 - 27719562
Alignment:
Q  186 tatatttatatagtttagaggtaaagttggagagagaatgatagtttagggactaaattgatgatttattt 256  Q
    |||||||||||||||||| |   || ||||||||||||||||||| |||||||||| |||||| |||||||    
T  27719632 tatatttatatagtttagggactaaattggagagagaatgatagtatagggactaagttgatgctttattt 27719562  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 31594698 - 31594630
Alignment:
Q  189 atttatatagtttagaggtaaagttggagagagaatgatagtttagggactaaattgatgatttatttg 257  Q
    ||||||||| ||||||| |||| ||||||||||||||||| |||| ||||||||| |||| ||| ||||    
T  31594698 atttatatactttagagataaaattggagagagaatgatactttaaggactaaatcgatggtttgtttg 31594630  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 421842 - 421793
Alignment:
Q  32 tccctaaactatcacactcccaccaatttagtccttaaactataaaaatc 81  Q
    ||||||||||||||| ||| |||||||||||||| |||||||| ||||||    
T  421842 tccctaaactatcactctctcaccaatttagtccctaaactattaaaatc 421793  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 4854279 - 4854368
Alignment:
Q  164 atatactataaggactatttactatatttatatagtttagaggtaaagttggagagagaatgatagtttagggactaaattgatgatttatt 255  Q
    |||||||  |||||||||||| |||||||||||| ||||| |   || ||||||||||  ||||| |||| ||| |||||||||| ||||||    
T  4854279 atatactgcaaggactatttattatatttatatactttagggaccaaattggagagag--tgatactttatggattaaattgatggtttatt 4854368  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 2886248 - 2886315
Alignment:
Q  13 gaataaaccataaatatagtccctaaactatcacactcccaccaatttagtccttaaactataaaaat 80  Q
    ||||||||||| |||||||||| ||||||||||| |||||  |||||||  || ||||||||||||||    
T  2886248 gaataaaccatcaatatagtccttaaactatcactctcccttcaatttatcccctaaactataaaaat 2886315  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 19568673 - 19568607
Alignment:
Q  13 gaataaaccataaatatagtccctaaactatcacactcccaccaatttagtccttaaactataaaaa 79  Q
    ||||||||||| ||| |||||||| |||| |||  ||| |||||||| ||||| |||||||||||||    
T  19568673 gaataaaccatcaatttagtccctgaactttcaacctctcaccaattcagtccctaaactataaaaa 19568607  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 32478737 - 32478787
Alignment:
Q  31 gtccctaaactatcacactcccaccaatttagtccttaaactataaaaatc 81  Q
    |||||||||||||||  |||||||||||||||||| |||||||| ||||||    
T  32478737 gtccctaaactatcagtctcccaccaatttagtccataaactattaaaatc 32478787  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 42803169 - 42803096
Alignment:
Q  176 gactatttactatatttatatagtttagaggtaaagttggagagagaatgatagtttagggactaaattgatga 249  Q
    ||||||||| ||||||| ||||||||||||   || |||| ||||||||||||||||| ||| |||||| ||||    
T  42803169 gactatttaatatatttgtatagtttagagactaaattggtgagagaatgatagtttatggattaaattcatga 42803096  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 6774343 - 6774303
Alignment:
Q  212 ttggagagagaatgatagtttagggactaaattgatgattt 252  Q
    ||||||||| ||||||| ||||| |||||||||||||||||    
T  6774343 ttggagagaaaatgatactttagagactaaattgatgattt 6774303  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 32576199 - 32576235
Alignment:
Q  212 ttggagagagaatgatagtttagggactaaattgatg 248  Q
    ||||||||||| |||||||||||||||||||||||||    
T  32576199 ttggagagagactgatagtttagggactaaattgatg 32576235  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 18813282 - 18813312
Alignment:
Q  225 gatagtttagggactaaattgatgatttatt 255  Q
    |||||||||||||||||||||||||||||||    
T  18813282 gatagtttagggactaaattgatgatttatt 18813312  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 41571454 - 41571575
Alignment:
Q  123 agtccctaacatcttaatagcagggactgaatttac--atttcatatactataaggactatttactatatttatatagttt-agaggtaaagttggagag 219  Q
    |||||| ||||||||||||||||||||| | || ||  |||| |||||||||||| |||||||| | || ||| ||||||| |||| |||| || |||||    
T  41571454 agtcccaaacatcttaatagcagggactaagttgacggattttatatactataagtactatttagtcta-ttagatagtttaagagctaaa-ttagagag 41571551  T
Q  220 agaatgatagtttagggactaaat 243  Q
    || ||||||  |||||||||||||    
T  41571552 aggatgataaattagggactaaat 41571575  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 42403392 - 42403349
Alignment:
Q  212 ttggagagagaatgatagtttagggactaaattgatgatttatt 255  Q
    ||||||||||| |||||||||||||||||||||| || ||||||    
T  42403392 ttggagagagagtgatagtttagggactaaattgttggtttatt 42403349  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 48249660 - 48249630
Alignment:
Q  225 gatagtttagggactaaattgatgatttatt 255  Q
    |||||||||||||||||||||||||||||||    
T  48249660 gatagtttagggactaaattgatgatttatt 48249630  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 8430562 - 8430627
Alignment:
Q  31 gtccctaaactatcacactcccaccaatttagtccttaaactat-aaaaatctatcaatttagtcc 95  Q
    |||||||||||||||   | ||||||||||||||| |||||||| ||||||  |||||||||||||    
T  8430562 gtccctaaactatcattgttccaccaatttagtccctaaactatgaaaaatacatcaatttagtcc 8430627  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 37080267 - 37080232
Alignment:
Q  220 agaatgatagtttagggactaaattgatgatttatt 255  Q
    |||||||||||||||||| |||||||||||||||||    
T  37080267 agaatgatagtttagggattaaattgatgatttatt 37080232  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 33726458 - 33726502
Alignment:
Q  36 taaactatcacactcccaccaatttagtccttaaactataaaaat 80  Q
    ||||||||||| ||| ||||||||||||| ||||||||| |||||    
T  33726458 taaactatcactctctcaccaatttagtcattaaactattaaaat 33726502  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 58108 - 58185
Alignment:
Q  67 taaactata-aaaatctatcaatttagtccttgaagtatataaaaatttgtcagttcagtccctaacatcttaatagca 144  Q
    ||||||||| |||||  |||||||||||| |||||||||| || ||| ||||| || ||||| ||||||||||||||||    
T  58108 taaactatataaaattcatcaatttagtc-ttgaagtataaaagaatctgtcaatttagtccataacatcttaatagca 58185  T

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