View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5901_high_9 (Length: 237)
Name: NF5901_high_9
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5901_high_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 44563072 - 44563296
Alignment:
| Q |
13 |
aatatgaacaagcataagtgcagtggcgcatgacacaatagcacacgacactttagcaatcgtcattacaacagcaacagctttcgtatgagctgagaat |
112 |
Q |
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| T |
44563072 |
aatatgaacaagcataagtgcagtggcgcatgacacaatagcacacgacactttagcaatcgtcattacaacagcaacagctttcgtatgagctgagaat |
44563171 |
T |
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| Q |
113 |
gtccacaaatttataaaatgagttgcaccacatagaacaataaaagccccaaactgcataagaacccatctatatggaaagaaagcagatttctgaacaa |
212 |
Q |
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| T |
44563172 |
gtccacaaatttataaaatgagttgcaccacatagaacaataaaagccccaaactgcataagaacccatctatatggaaagaaagcagatttctgaacaa |
44563271 |
T |
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| Q |
213 |
aataaatgagttccaccggaatcga |
237 |
Q |
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| T |
44563272 |
aataaatgagttccaccggaatcga |
44563296 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 10593942 - 10593842
Alignment:
| Q |
113 |
gtccacaaatttataaaatgagttgcaccacatagaacaataaaagccccaaactgcataagaacccatctatatggaaagaaagcagatttctgaacaa |
212 |
Q |
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| T |
10593942 |
gtccataaatttattagatgtgttgctccacatagaactatgaaggcaccaaactgaacaaggacccatctatatggaaatactgcagatttcttaacaa |
10593843 |
T |
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| Q |
213 |
a |
213 |
Q |
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| T |
10593842 |
a |
10593842 |
T |
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