View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5901_low_2 (Length: 582)

Name: NF5901_low_2
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5901_low_2
NF5901_low_2
[»] chr4 (25 HSPs)
chr4 (18-358)||(38367321-38367663)
chr4 (371-523)||(12206760-12206912)
chr4 (375-523)||(31689177-31689325)
chr4 (372-509)||(12210853-12210989)
chr4 (374-447)||(31914522-31914595)
chr4 (372-443)||(23089270-23089341)
chr4 (374-447)||(20627526-20627599)
chr4 (374-443)||(31135169-31135238)
chr4 (371-443)||(23088272-23088344)
chr4 (372-447)||(31135894-31135969)
chr4 (371-434)||(31908362-31908425)
chr4 (371-447)||(34837967-34838043)
chr4 (373-442)||(12921863-12921932)
chr4 (371-447)||(11791357-11791433)
chr4 (374-449)||(6311778-6311853)
chr4 (374-442)||(41164169-41164237)
chr4 (375-435)||(48314367-48314427)
chr4 (371-449)||(6310815-6310893)
chr4 (372-447)||(34836747-34836822)
chr4 (383-442)||(34978352-34978411)
chr4 (375-435)||(48315193-48315253)
chr4 (372-442)||(12921126-12921196)
chr4 (378-447)||(11792314-11792383)
chr4 (383-443)||(20628338-20628398)
chr4 (383-443)||(54501642-54501702)
[»] chr8 (17 HSPs)
chr8 (372-569)||(16113141-16113335)
chr8 (372-523)||(16105945-16106095)
chr8 (371-510)||(16101519-16101657)
chr8 (375-447)||(30971285-30971357)
chr8 (371-447)||(30972002-30972078)
chr8 (371-433)||(42757602-42757664)
chr8 (371-433)||(23220004-23220066)
chr8 (373-442)||(5152454-5152523)
chr8 (371-421)||(1274129-1274179)
chr8 (375-447)||(1636848-1636920)
chr8 (373-433)||(12836696-12836756)
chr8 (371-443)||(32744006-32744078)
chr8 (371-433)||(18573510-18573572)
chr8 (375-433)||(23220888-23220946)
chr8 (374-420)||(3743129-3743175)
chr8 (380-434)||(42758412-42758466)
chr8 (375-423)||(28966538-28966586)
[»] chr3 (17 HSPs)
chr3 (377-523)||(17619065-17619210)
chr3 (372-523)||(29032726-29032875)
chr3 (388-523)||(17615035-17615169)
chr3 (371-501)||(54285758-54285887)
chr3 (372-447)||(4300930-4301005)
chr3 (371-437)||(27359841-27359907)
chr3 (371-438)||(28422850-28422917)
chr3 (371-442)||(40929858-40929929)
chr3 (374-453)||(33148289-33148368)
chr3 (372-449)||(33147329-33147406)
chr3 (371-435)||(27317483-27317547)
chr3 (371-447)||(27473853-27473929)
chr3 (375-439)||(51341874-51341938)
chr3 (375-433)||(39644540-39644598)
chr3 (373-414)||(8652108-8652149)
chr3 (372-433)||(39645379-39645440)
chr3 (371-447)||(27474876-27474952)
[»] chr1 (13 HSPs)
chr1 (371-453)||(42026892-42026974)
chr1 (371-453)||(42031683-42031765)
chr1 (371-453)||(16801969-16802051)
chr1 (371-442)||(17239407-17239478)
chr1 (371-447)||(34267972-34268048)
chr1 (371-434)||(17238593-17238656)
chr1 (375-443)||(16802682-16802750)
chr1 (371-447)||(34269080-34269156)
chr1 (371-447)||(34275315-34275391)
chr1 (375-447)||(24790846-24790918)
chr1 (470-502)||(42026989-42027021)
chr1 (470-502)||(42031636-42031668)
chr1 (371-435)||(48572817-48572881)
[»] chr7 (11 HSPs)
chr7 (371-453)||(5995249-5995331)
chr7 (371-443)||(5997611-5997683)
chr7 (371-443)||(41970884-41970956)
chr7 (374-443)||(27268242-27268311)
chr7 (371-435)||(45550994-45551058)
chr7 (371-433)||(38887327-38887389)
chr7 (373-435)||(45551813-45551875)
chr7 (379-442)||(1409380-1409443)
chr7 (374-443)||(27258107-27258177)
chr7 (375-433)||(28778109-28778167)
chr7 (373-433)||(47552509-47552569)
[»] chr6 (12 HSPs)
chr6 (372-443)||(19237603-19237674)
chr6 (375-453)||(17280689-17280767)
chr6 (371-453)||(17279880-17279962)
chr6 (373-448)||(29375038-29375113)
chr6 (371-447)||(8238065-8238141)
chr6 (375-423)||(8683876-8683924)
chr6 (371-447)||(10793575-10793651)
chr6 (371-443)||(5860546-5860618)
chr6 (371-447)||(10792479-10792555)
chr6 (374-446)||(7001770-7001842)
chr6 (372-443)||(28522618-28522689)
chr6 (375-433)||(12441716-12441774)
[»] chr5 (4 HSPs)
chr5 (371-447)||(33471161-33471237)
chr5 (371-436)||(22671603-22671667)
chr5 (375-442)||(33471854-33471921)
chr5 (372-433)||(30667861-30667922)
[»] scaffold0015 (1 HSPs)
scaffold0015 (372-438)||(45330-45396)
[»] chr2 (11 HSPs)
chr2 (374-447)||(16591522-16591595)
chr2 (373-447)||(18767565-18767639)
chr2 (371-433)||(39240864-39240926)
chr2 (383-447)||(29558160-29558223)
chr2 (382-443)||(9244251-9244312)
chr2 (371-443)||(45631139-45631211)
chr2 (375-443)||(5483914-5483982)
chr2 (371-442)||(9243990-9244061)
chr2 (371-421)||(32667406-32667456)
chr2 (371-447)||(18236653-18236729)
chr2 (373-443)||(18237623-18237693)
[»] scaffold0676 (1 HSPs)
scaffold0676 (381-433)||(3168-3220)
[»] scaffold0112 (3 HSPs)
scaffold0112 (375-414)||(24728-24767)
scaffold0112 (375-433)||(35003-35061)
scaffold0112 (371-420)||(35816-35865)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 38367663 - 38367321
Alignment:
Q  18 tctacaagatcttttttatcccatgttattgcctcctatagaggaagttctgccaaggctaatatgtatcgagtgtctgatagagcgggagaatgaaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38367663 tctacaagatcttttttatcccatgttattgcctcctatagaggaagttctgcctaggctaatatgtatcgagtgtctgatagagcgggagaatgaaaag 38367564  T
Q  118 tgaaactatggatatttttgcagatat--ttagaaacataattttgaaggggaatgatactggtatggaatacgccgatcaatatcctagactgcaacaa 215  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38367563 tgaaactatggatgtttttgcagatatatttagaaacataattttgaaggggaatgatactggtatggaatacgccgatcaatattctagactgcaacaa 38367464  T
Q  216 attgtcatagaaacaaatttgggaatccagtatcgagtgaggatcaaaaggaggagctactcaagacttgcaaaccgagcgactcggtagttaggctgag 315  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38367463 attatcatagaaacaaatttgggaatccagtatcgagtgaggatcaaaaggaggagctactcaagacttgcaaaccgagcgactcggtagttaggctgag 38367364  T
Q  316 atttagtcttatcattctcatataagatacacattctcacttg 358  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  38367363 atttagtcttatcattttcatataggatacacattctcacttg 38367321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 371 - 523
Target Start/End: Original strand, 12206760 - 12206912
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgcccacgnnnnnnnnnnnnnga 470  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||              ||    
T  12206760 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaacctgcaccttttcacttggacacaaatggccacatttttgtttttttga 12206859  T
Q  471 ggaaattaaaactgaagggtaaaacggtaatttcaattaacttttaattttcc 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12206860 ggaaattaaaactgaagggtaaaacggtaatttcaattaacttttaattttcc 12206912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 375 - 523
Target Start/End: Original strand, 31689177 - 31689325
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgcccacgnnnnnnnnnnnnngaggaa 474  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||             ||||||    
T  31689177 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcactcggacacaaatgcccacgtttttgtttttttgaggaa 31689276  T
Q  475 attaaaactgaagggtaaaacggtaatttcaattaacttttaattttcc 523  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31689277 attaaaactgaagggtaaaatggtaatttcaattaacttttaattttcc 31689325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 372 - 509
Target Start/End: Complemental strand, 12210989 - 12210853
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgcccacgnnnnnnnnnnnnngag 471  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||              |||    
T  12210989 gggtttgctacaatagaccaactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaatgcccac-atttttgttttttgag 12210891  T
Q  472 gaaattaaaactgaagggtaaaacggtaatttcaatta 509  Q
    |||||||||| |||||||||||||||||||||||||||    
T  12210890 gaaattaaaattgaagggtaaaacggtaatttcaatta 12210853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 31914522 - 31914595
Alignment:
Q  374 gtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  31914522 gtttgctacaatagacccactcattttcatgaagatctattttagcaaccagcaccttttcacttggacacaaa 31914595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 372 - 443
Target Start/End: Complemental strand, 23089341 - 23089270
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||    
T  23089341 gggtttgctacaatagacccactcattttcatgtaggtctattttagcaaccaacaccttttcacttggaca 23089270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 20627526 - 20627599
Alignment:
Q  374 gtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||  ||||||||||||||||||||||    
T  20627526 gtttgctacaatagacccactcattttcatgaaagtctattttagcacccaacaccttttcacttggacacaaa 20627599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 374 - 443
Target Start/End: Original strand, 31135169 - 31135238
Alignment:
Q  374 gtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  31135169 gtttgctacaatagaccaactcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 31135238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 23088272 - 23088344
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||| |||||| ||||    
T  23088272 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacaccttctcacttcgaca 23088344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 372 - 447
Target Start/End: Complemental strand, 31135969 - 31135894
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    ||||||||||||||||| ||| ||| |||||||||||| |||| ||||||||  ||||||||||||||||||||||    
T  31135969 gggtttgctacaatagatccattcaatttcatgaaggtgtattttagcaaccaacaccttttcacttggacacaaa 31135894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 434
Target Start/End: Complemental strand, 31908425 - 31908362
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttc 434  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||  |||||||||||    
T  31908425 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaagttgcaccttttc 31908362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 34838043 - 34837967
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||||||||||| |||||| | |||| ||||||||  ||| |||||| |||||||||||    
T  34838043 ggggtttgctacaatagacccactcatttttatgaagttttattttagcaaccaacactttttcaattggacacaaa 34837967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 12921932 - 12921863
Alignment:
Q  373 ggtttgctacaatagacccact-cattttcatgaaggtctattctagcaacctgcaccttttcacttggac 442  Q
    |||||||||||||||||||||| |||||| ||||||||||||| ||||| || ||||||||||| ||||||    
T  12921932 ggtttgctacaatagacccacttcatttt-atgaaggtctattttagcatccagcaccttttcatttggac 12921863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 11791357 - 11791433
Alignment:
Q  371 ggggtttgctacaatagacccac-tcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||| |||||| |   |||||||||||||||||||||    
T  11791357 ggggtttgctacaatagacccacttcatttt-atgaatgtctattttagcaagcaataccttttcacttggacacaaa 11791433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 449
Target Start/End: Complemental strand, 6311853 - 6311778
Alignment:
Q  374 gtttgctacaatagacccac-tcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatg 449  Q
    |||||||| ||||||||||| |||||| |||||||||||||| ||||||  |||||||||||| ||||||| |||||    
T  6311853 gtttgctataatagacccacctcattt-catgaaggtctattttagcaaggtgcaccttttcatttggacataaatg 6311778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 442
Target Start/End: Complemental strand, 41164237 - 41164169
Alignment:
Q  374 gtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggac 442  Q
    |||||||||| |||||||| ||||||| ||||| ||||||| ||||||||  ||| |||||||||||||    
T  41164237 gtttgctacagtagacccattcatttttatgaaagtctattttagcaaccaacacattttcacttggac 41164169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 48314367 - 48314427
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttca 435  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||||| |  ||||||||||    
T  48314367 tttgctgcaatagacccactcattttcatgaaagtctattttagcaagcaacaccttttca 48314427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 6310815 - 6310893
Alignment:
Q  371 ggggtttgctacaatagacccac-tcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatg 449  Q
    ||||||| |||||||||| |||| |||||| |||||||||||||| ||| ||  |||||||||||||||||||| |||||    
T  6310815 ggggtttactacaatagatccacctcattt-catgaaggtctattttaggaaggtgcaccttttcacttggacataaatg 6310893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 34836747 - 34836822
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||| |||||||||||||||| ||||| ||||||||||||| || |||||  || ||||||| |||||| ||||    
T  34836747 gggttttctacaatagacccacttatttttatgaaggtctattttatcaaccaacatcttttcaattggacccaaa 34836822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 442
Target Start/End: Original strand, 34978352 - 34978411
Alignment:
Q  383 aatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggac 442  Q
    |||||||||||||||||| ||||||||||||| || |||||  |||||||||| ||||||    
T  34978352 aatagacccactcatttttatgaaggtctattttatcaaccaacaccttttcaattggac 34978411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 48315253 - 48315193
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttca 435  Q
    |||||||||||||||||||| |||||||| ||||| |||| |||||| |  ||||||||||    
T  48315253 tttgctacaatagacccacttattttcataaaggtttattttagcaagcaacaccttttca 48315193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 442
Target Start/End: Original strand, 12921126 - 12921196
Alignment:
Q  372 gggtttgctacaatagacccac-tcattttcatgaaggtctattctagcaacctgcaccttttcacttggac 442  Q
    |||||||||||||||||| ||| ||||||| |||||||| |||| ||||| || ||||||||||| ||||||    
T  12921126 gggtttgctacaatagacgcacttcatttt-atgaaggtttattttagcatccagcaccttttcatttggac 12921196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 11792383 - 11792314
Alignment:
Q  378 gctacaatagacccact-cattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||| |||| || ||| ||||||||||||| |||||| || ||||||| ||||||||||||||    
T  11792383 gctacaatagacgcacttcagttt-atgaaggtctattttagcaagctacacctttacacttggacacaaa 11792314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 443
Target Start/End: Complemental strand, 20628398 - 20628338
Alignment:
Q  383 aatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||||||| |||||| ||||||||||||| || ||| |  |||||||||||| |||||    
T  20628398 aatagacccacccatttttatgaaggtctattttaccaagcaacaccttttcactaggaca 20628338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 443
Target Start/End: Complemental strand, 54501702 - 54501642
Alignment:
Q  383 aatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||| |||||||||| ||||||||||| | ||||||||  ||| |||| |||||||||    
T  54501702 aatagactcactcatttttatgaaggtctaatttagcaaccaacacatttttacttggaca 54501642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 372 - 569
Target Start/End: Complemental strand, 16113335 - 16113141
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgcccacgnnnnnnnnnnnnngag 471  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||             |||    
T  16113335 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaatgcccacg-tttttgttttttgag 16113237  T
Q  472 gaaattaaaactgaagggtaaaacggtaatttcaattaacttttaattttccnnnnnnncttccccagaagaattccgaaggtcggacgttctcttct 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||   ||||||| |||||||| ||||||||||||    
T  16113236 gaaattaaaactgaagggtaaaacggtaatttcaattaacttttaattttcctttttttcttcccc--cagaattctgaaggtcgcacgttctcttct 16113141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 372 - 523
Target Start/End: Complemental strand, 16106095 - 16105945
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgcccacgnnnnnnnnnnnnngag 471  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||             |||    
T  16106095 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaatgcccacg-tttttgttttttgag 16105997  T
Q  472 gaaattaaaactgaagggtaaaacggtaatttcaattaacttttaattttcc 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16105996 gaaattaaaactgaagggtaaaacggtaatttcaattaacttttaattttcc 16105945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 371 - 510
Target Start/End: Original strand, 16101519 - 16101657
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgcccacgnnnnnnnnnnnnnga 470  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||             ||    
T  16101519 ggggtttgctacaatagacacactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaatgcccacg-tttttgttttttga 16101617  T
Q  471 ggaaattaaaactgaagggtaaaacggtaatttcaattaa 510  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  16101618 ggaaattaaaaccgaagggtaaaatggtaatttcaattaa 16101657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 30971285 - 30971357
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||||||||||||||    
T  30971285 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccatcactttttcacttggacacaaa 30971357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 30972078 - 30972002
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||  |||||||||| |||||||||||    
T  30972078 ggggtttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcatttggacacaaa 30972002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 433
Target Start/End: Original strand, 42757602 - 42757664
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    |||||||||||||||||||||||||||||| |||||||| |||| |||||| |||||||||||    
T  42757602 ggggtttgctacaatagacccactcatttttatgaaggtttattttagcaagctgcacctttt 42757664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 371 - 433
Target Start/End: Original strand, 23220004 - 23220066
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    ||||||||||||||||||||||| | |||| ||||||||||||| |||||| |||||||||||    
T  23220004 ggggtttgctacaatagacccacccttttttatgaaggtctattttagcaagctgcacctttt 23220066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 5152523 - 5152454
Alignment:
Q  373 ggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggac 442  Q
    ||||||||||||||||||| |||||||| ||||||||||||| ||||||   ||||||||||| ||||||    
T  5152523 ggtttgctacaatagacccgctcatttttatgaaggtctattttagcaagtggcaccttttcatttggac 5152454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 1274179 - 1274129
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaa 421  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  1274179 ggggtttgctacaatagaccaacttattttcatgaaggtctattttagcaa 1274129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 1636848 - 1636920
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    ||||||||||||||  ||||||||||||||||| |||||| | ||||||  || ||||||| |||||||||||    
T  1636848 tttgctacaatagattcactcattttcatgaagatctatttttgcaaccaacatcttttcatttggacacaaa 1636920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 433
Target Start/End: Original strand, 12836696 - 12836756
Alignment:
Q  373 ggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    |||||||||||||||||||||   |||||||||||||||||| ||||||  ||||||||||    
T  12836696 ggtttgctacaatagacccacattttttcatgaaggtctattttagcaaggtgcacctttt 12836756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 32744006 - 32744078
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||||||||| |||||  | ||||||| ||||||||||||| ||||||||  ||||||||||| ||||||    
T  32744006 ggggtttgctacagtagacttattcatttttatgaaggtctattttagcaaccaacaccttttcacgtggaca 32744078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 433
Target Start/End: Original strand, 18573510 - 18573572
Alignment:
Q  371 ggggtttgctacaatagacccactcatttt-catgaaggtctattctagcaacctgcacctttt 433  Q
    ||||||||||||||||||||||| |||||| |||||||||||||| ||||||  ||||||||||    
T  18573510 ggggtttgctacaatagacccac-cattttacatgaaggtctattttagcaagatgcacctttt 18573572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 433
Target Start/End: Complemental strand, 23220946 - 23220888
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    ||||||||||||||||| | | |||| ||||||||||||| |||||| |||||||||||    
T  23220946 tttgctacaatagaccctcccttttttatgaaggtctattttagcaagctgcacctttt 23220888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 3743129 - 3743175
Alignment:
Q  374 gtttgctacaatagacccactcattttcatgaaggtctattctagca 420  Q
    ||||||||||||||| || |||||||| ||||||||||||| |||||    
T  3743129 gtttgctacaatagatcccctcatttttatgaaggtctattttagca 3743175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 42758466 - 42758412
Alignment:
Q  380 tacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttc 434  Q
    |||||||||||||||||||   ||||||||||||| |||||| |||||| |||||    
T  42758466 tacaatagacccactcattaatatgaaggtctattttagcaagctgcacattttc 42758412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 28966586 - 28966538
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacc 423  Q
    |||||||||||| ||| ||||||||| |||||| |||||| ||||||||    
T  28966586 tttgctacaataaaccaactcatttttatgaagttctattttagcaacc 28966538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 377 - 523
Target Start/End: Complemental strand, 17619210 - 17619065
Alignment:
Q  377 tgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgcccacgnnnnnnnnnnnnngaggaaat 476  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||              |||||||    
T  17619210 tgctacaatagacccactcattttcatgaaggtctattttagcaaccagtaccttttcacttggacacaaatgcccacgtttatgttttttt-aggaaat 17619112  T
Q  477 taaaactgaagggtaaaacggtaatttcaattaacttttaattttcc 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17619111 taaaactgaagggtaaaacggtaatttcaattaacttttaattttcc 17619065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 372 - 523
Target Start/End: Complemental strand, 29032875 - 29032726
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgcccacgnnnnnnnnnnnnngag 471  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||              |||    
T  29032875 gggtttgctacaatagacccattcatttttatgaaggtctattttagcaacctgtacc-tttcacttggacacaaatgcccac-atttttgttttttgag 29032778  T
Q  472 gaaattaaaactgaagggtaaaacggtaatttcaattaacttttaattttcc 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29032777 gaaattaaaactgaagggtaaaacggtaatttcaattaacttttaattttcc 29032726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 388 - 523
Target Start/End: Original strand, 17615035 - 17615169
Alignment:
Q  388 acccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgcccacgnnnnnnnnnnnnngaggaaattaaaactgaag 487  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |||             |||||||||||||||||||    
T  17615035 acccactcatttttatgaaggtctattttagcaacttgcaccttttcacttggacacaaatgccaacgtttttgtttttt-gaggaaattaaaactgaag 17615133  T
Q  488 ggtaaaacggtaatttcaattaacttttaattttcc 523  Q
    ||||||||||||||||||||||||||||||||||||    
T  17615134 ggtaaaacggtaatttcaattaacttttaattttcc 17615169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 371 - 501
Target Start/End: Complemental strand, 54285887 - 54285758
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgcccacgnnnnnnnnnnnnnga 470  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||||||||||             ||    
T  54285887 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaacctacaccttttcatttggacacaaatgcccacg-tttttgttttttga 54285789  T
Q  471 ggaaattaaaactgaagggtaaaacggtaat 501  Q
    |||||||||||||||||||||||||||||||    
T  54285788 ggaaattaaaactgaagggtaaaacggtaat 54285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 4300930 - 4301005
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    ||||||||||||||||||||||| |||||||||||| |||||| ||||||||  ||||||||||||||||||||||    
T  4300930 gggtttgctacaatagacccacttattttcatgaagatctattttagcaaccaacaccttttcacttggacacaaa 4301005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 27359907 - 27359841
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcact 437  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||    
T  27359907 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaacaacaccttttcact 27359841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 438
Target Start/End: Complemental strand, 28422917 - 28422850
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcactt 438  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||||||||  |||||||||||||    
T  28422917 ggggtttgctacaatagacccactcatttttatgaaagtctattttagcaaccatcaccttttcactt 28422850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 40929929 - 40929858
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggac 442  Q
    |||||||||||||||||||||||||||||| |||||||| |||| ||||||||  |||||||||| ||||||    
T  40929929 ggggtttgctacaatagacccactcatttttatgaaggtttattttagcaaccaacaccttttcatttggac 40929858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 453
Target Start/End: Complemental strand, 33148368 - 33148289
Alignment:
Q  374 gtttgctacaatagacccac-tcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgccca 453  Q
    ||||||||||||| |||||| ||||||| ||||||||||||| ||||||  |||||||||||||||||||| |||||||||    
T  33148368 gtttgctacaataaacccacctcatttt-atgaaggtctattttagcaaggtgcaccttttcacttggacataaatgccca 33148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 33147329 - 33147406
Alignment:
Q  372 gggtttgctacaatagacccac-tcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatg 449  Q
    |||||||||||||||||||||| |||||| ||||||| |||||| ||||||  |||||||||||||||||||| |||||    
T  33147329 gggtttgctacaatagacccacctcattt-catgaagatctattttagcaagatgcaccttttcacttggacataaatg 33147406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 27317547 - 27317483
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttca 435  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||| |  ||||||||||    
T  27317547 ggggtttgctacaatagacccgctcattttcatgaaggtttattttagcaagcaacaccttttca 27317483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 27473853 - 27473929
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||||||  |||  |||||||||||| ||||||  |||||||||||  |||||||||||    
T  27473853 ggggtttgctacaatagacccactctattttgtgaaggtctattttagcaagatgcaccttttcctttggacacaaa 27473929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 51341874 - 51341938
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttg 439  Q
    |||||||||||||||| ||||||| ||||||||||||||| || |||||  |||||||| |||||    
T  51341874 tttgctacaatagacctactcattctcatgaaggtctattttaacaaccaacacctttttacttg 51341938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 39644540 - 39644598
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    |||||||||||||||||||   |||||||||||||| ||| |||||| |||||||||||    
T  39644540 tttgctacaatagacccacctcttttcatgaaggtccattttagcaagctgcacctttt 39644598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 8652108 - 8652149
Alignment:
Q  373 ggtttgctacaatagacccactcattttcatgaaggtctatt 414  Q
    |||||||||||||||||||||   ||||||||||||||||||    
T  8652108 ggtttgctacaatagacccacctcttttcatgaaggtctatt 8652149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 433
Target Start/End: Complemental strand, 39645440 - 39645379
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    ||||||||||||||||||||||   |||| ||||||||| ||| |||||| ||| |||||||    
T  39645440 gggtttgctacaatagacccacctctttttatgaaggtccattttagcaagctgtacctttt 39645379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 27474952 - 27474876
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||||||  |||  |||| ||||||| ||||||  | ||||||||   |||||||||||    
T  27474952 ggggtttgctacaatagacccactctattttgtgaacgtctattttagcaagatacacctttttctttggacacaaa 27474876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 42026892 - 42026974
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgccca 453  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42026892 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaatgccca 42026974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 371 - 453
Target Start/End: Complemental strand, 42031765 - 42031683
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgccca 453  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42031765 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaatgccca 42031683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 16801969 - 16802051
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgccca 453  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||| |||| ||||    
T  16801969 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaggggcaccttttcacttggacaaaaataccca 16802051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 17239478 - 17239407
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggac 442  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||   ||||||||||| ||||||    
T  17239478 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaagtagcaccttttcatttggac 17239407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 34267972 - 34268048
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||||||  ||| || |||||||||| |||||| |  ||||||||||||||||||||||    
T  34267972 ggggtttgctacaatagacccactccattttatcaaggtctattttagcaagcaacaccttttcacttggacacaaa 34268048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 17238593 - 17238656
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttc 434  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||   ||||||||||    
T  17238593 ggggtttgctacaatagacccactcatttttatgaaggtctattttagcaagtagcaccttttc 17238656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 16802750 - 16802682
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    |||||||||||||||||||||||||| || |||||||||| ||||||   | |||||||||||||||||    
T  16802750 tttgctacaatagacccactcatttttataaaggtctattttagcaagaagtaccttttcacttggaca 16802682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 34269156 - 34269080
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||| ||  ||| ||||||||||||| |||||| |  |||||||||| |||||||||||    
T  34269156 ggggtttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttcatttggacacaaa 34269080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 34275391 - 34275315
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||| ||  ||| ||||||||||||| |||||| |  |||||||||| |||||||||||    
T  34275391 ggggtttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttcatttggacacaaa 34275315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 375 - 447
Target Start/End: Complemental strand, 24790918 - 24790846
Alignment:
Q  375 tttgctacaatagacccact-cattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||| || |  ||| ||||||||||||||||||    
T  24790918 tttgctacaatagacccacttcatttt-atgaaggtctattttagaaagcaacactttttcacttggacacaaa 24790846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 502
Target Start/End: Original strand, 42026989 - 42027021
Alignment:
Q  470 aggaaattaaaactgaagggtaaaacggtaatt 502  Q
    ||||||||||||| |||||||||||||||||||    
T  42026989 aggaaattaaaacggaagggtaaaacggtaatt 42027021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 502
Target Start/End: Complemental strand, 42031668 - 42031636
Alignment:
Q  470 aggaaattaaaactgaagggtaaaacggtaatt 502  Q
    ||||||||||||| |||||||||||||||||||    
T  42031668 aggaaattaaaacggaagggtaaaacggtaatt 42031636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 48572881 - 48572817
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttca 435  Q
    |||||||||||||||||||||||   ||||  | |||||||||| ||||| | ||||||||||||    
T  48572881 ggggtttgctacaatagacccacctctttttgttaaggtctattttagcatcatgcaccttttca 48572817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 5995249 - 5995331
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgccca 453  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||||||    
T  5995249 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacaccttttcatttggacacaaatgccca 5995331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 371 - 443
Target Start/End: Complemental strand, 5997683 - 5997611
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  5997683 ggggtttgctacaatagacccactcattttcatgaaggtctattttagcaaccagcaccttttcacttggaca 5997611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 41970884 - 41970956
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||  ||||||||||||||||||    
T  41970884 ggggtttgctacaatagacccactcattttcatgaagatctattttagcaaccaacaccttttcacttggaca 41970956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 443
Target Start/End: Complemental strand, 27268311 - 27268242
Alignment:
Q  374 gtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||| ||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  27268311 gtttgatacaatagatccactcattttcatgaaggtctattttagcaatcagcaccttttcacttggaca 27268242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 45550994 - 45551058
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttca 435  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||||    
T  45550994 ggggtttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttca 45551058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 433
Target Start/End: Original strand, 38887327 - 38887389
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||||||||    
T  38887327 ggggtttgctacaatagactcactcattttcatgaaggtctattttagcaaggtgcacctttt 38887389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 435
Target Start/End: Complemental strand, 45551875 - 45551813
Alignment:
Q  373 ggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttca 435  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||||    
T  45551875 ggtttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttca 45551813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 1409380 - 1409443
Alignment:
Q  379 ctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggac 442  Q
    |||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||| |||||||    
T  1409380 ctacaatagacccactcatttttatgaaggtctattttagcaaggtgcaccttttctcttggac 1409443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 374 - 443
Target Start/End: Complemental strand, 27258177 - 27258107
Alignment:
Q  374 gtttgctacaatagacccactcattttcatgaa-ggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||| ||||||| ||||||||||||||||| |||||||| |||||| |  ||||||||||||||||||    
T  27258177 gtttgctgcaatagatccactcattttcatgaagggtctattttagcaatcaacaccttttcacttggaca 27258107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 433
Target Start/End: Complemental strand, 28778167 - 28778109
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    |||||| |||||||||||||||||||||| |||||||||| |||| |||  ||||||||    
T  28778167 tttgcttcaatagacccactcattttcatcaaggtctattttagcgaccaacacctttt 28778109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 47552569 - 47552509
Alignment:
Q  373 ggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    ||||||||||||||||||||| | ||||||||||| |||||| |||||   ||||||||||    
T  47552569 ggtttgctacaatagacccaccctttttcatgaagatctattttagcatgatgcacctttt 47552509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 372 - 443
Target Start/End: Complemental strand, 19237674 - 19237603
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  19237674 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 19237603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 17280767 - 17280689
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgccca 453  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  17280767 tttgctacaattgacccactcattttcattaaggtctattttagcaaccaacaccttttcacttggacacaaatgccca 17280689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 17279880 - 17279962
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaatgccca 453  Q
    |||||||||||||||||||| | ||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||| ||||    
T  17279880 ggggtttgctacaatagacctattcatttttatgaaggtctattttagcaaccagcacctttttacttggacacaaataccca 17279962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 448
Target Start/End: Complemental strand, 29375113 - 29375038
Alignment:
Q  373 ggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaat 448  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||   ||||||||||||||||||| ||||    
T  29375113 ggtttgctacaatagatccactcattttcatgaaggtccattttagcaaggagcaccttttcacttggacaaaaat 29375038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 8238065 - 8238141
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||| |||||  |||||||||| |||||| ||||    
T  8238065 ggggtttgctacaatagactcactcatttttatgaaagtctattctatcaaccaacaccttttcaattggacccaaa 8238141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 8683924 - 8683876
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacc 423  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8683924 tttgctacaatagacccactcattttcatgaaggtctattttagcaacc 8683876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 10793651 - 10793575
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||||||  ||| || |||||||||| |||||| |  ||||||||||||||||||||||    
T  10793651 ggggtttgctacaatagacccactccattttatcaaggtctattttagcaagcaacaccttttcacttggacacaaa 10793575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 5860546 - 5860618
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    |||||||||||||||||||||||||||||| |||||||| |||| |||||||   ||| |||||| |||||||    
T  5860546 ggggtttgctacaatagacccactcatttttatgaaggtgtattttagcaacaaacacattttcatttggaca 5860618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 10792479 - 10792555
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||| ||  ||| ||||||||||||| |||||| |  |||||||||| |||||||||||    
T  10792479 ggggtttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttcatttggacacaaa 10792555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 7001842 - 7001770
Alignment:
Q  374 gtttgctacaatagacccact-cattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaa 446  Q
    ||||||| ||||||||||||| |||||| ||||||||||||| |||||  |  |||||||||||||||||||||    
T  7001842 gtttgctgcaatagacccacttcatttt-atgaaggtctattttagcatgcaacaccttttcacttggacacaa 7001770  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 443
Target Start/End: Original strand, 28522618 - 28522689
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||||||||||||||||||||  |||  ||||| |||||| |||||   |||||||||| |||||||||    
T  28522618 gggtttgctacaatagacccactctattttgtgaagctctattttagcaggatgcaccttttgacttggaca 28522689  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 433
Target Start/End: Complemental strand, 12441774 - 12441716
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    |||||||||||||||||||   |||||||||||||| ||| ||||||  ||||||||||    
T  12441774 tttgctacaatagacccacctcttttcatgaaggtccattttagcaagatgcacctttt 12441716  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 33471161 - 33471237
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||  |||||||||| |||||||||||    
T  33471161 ggggtttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcatttggacacaaa 33471237  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 436
Target Start/End: Original strand, 22671603 - 22671667
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcac 436  Q
    ||||||||||||||| |||||||||||||||||||||||||||| || |||||  |||||||||||    
T  22671603 ggggtttgctacaat-gacccactcattttcatgaaggtctattttaacaaccaacaccttttcac 22671667  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 442
Target Start/End: Complemental strand, 33471921 - 33471854
Alignment:
Q  375 tttgctacaatagacccact-cattttcatgaaggtctattctagcaacctgcaccttttcacttggac 442  Q
    |||||||||||||||||||| |||||| ||||||||||||| |||||||  ||||||||||| ||||||    
T  33471921 tttgctacaatagacccacttcatttt-atgaaggtctattttagcaactagcaccttttcatttggac 33471854  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 433
Target Start/End: Original strand, 30667861 - 30667922
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    ||||||||||||||||||||||   ||||||||||||| |||| ||||||  ||||||||||    
T  30667861 gggtttgctacaatagacccaccttttttcatgaaggtatattttagcaaggtgcacctttt 30667922  T

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Target: scaffold0015 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 45330 - 45396
Alignment:
Q  372 gggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcactt 438  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  45330 gggtttgctacaatagacccactcattttcatgaaggtctattttagcaagatgcaccttttcactt 45396  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 16591595 - 16591522
Alignment:
Q  374 gtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    ||||||||||||||||||| | | ||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  16591595 gtttgctacaatagacccatttaatttcatgaaggtctattttagcaaccaacaccttttcacttggacacaaa 16591522  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 447
Target Start/End: Complemental strand, 18767639 - 18767565
Alignment:
Q  373 ggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    ||||||||||||||||| |||||||||| || |||||||||| ||||||||  ||||||||||||| ||||||||    
T  18767639 ggtttgctacaatagactcactcatttttataaaggtctattttagcaaccaacaccttttcacttagacacaaa 18767565  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 433
Target Start/End: Complemental strand, 39240926 - 39240864
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||  ||||||||||    
T  39240926 ggggtttgctacaatagacccacccattttcatgaaggtctattttagcaagatgcacctttt 39240864  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 447
Target Start/End: Original strand, 29558160 - 29558223
Alignment:
Q  383 aatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    |||||||||||||||||| ||||||||||||| ||||||||  |||||||| |||||||||||||    
T  29558160 aatagacccactcatttttatgaaggtctatt-tagcaaccaacacctttttacttggacacaaa 29558223  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 9244251 - 9244312
Alignment:
Q  382 caatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||  |||||||||| |||||||    
T  9244251 caatagacccactcatttttatgaaggtctattttagcatccaacaccttttcagttggaca 9244312  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 443
Target Start/End: Complemental strand, 45631211 - 45631139
Alignment:
Q  371 ggggtttgctacaatagacccact-cattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||| |||||| || ||||||| ||||||||||    
T  45631211 ggggtttgttacaatagacccacttcatttt-atgaaggtctattttagcaagctacacctttacacttggaca 45631139  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 5483982 - 5483914
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    ||||||| |||||||| |||||||||||| |||||||||| ||||| ||  |||||||||| |||||||    
T  5483982 tttgctataatagaccaactcattttcataaaggtctattttagcatccaacaccttttcaattggaca 5483914  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 442
Target Start/End: Original strand, 9243990 - 9244061
Alignment:
Q  371 ggggtttgctacaatagacccac-tcattttcatgaaggtctattctagcaacctgcaccttttcacttggac 442  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |  ||||||||||| ||||||    
T  9243990 ggggtttgctacaatagacccacttcatttt-atgaaggtctattttagcaccgagcaccttttcatttggac 9244061  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 32667456 - 32667406
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaa 421  Q
    ||||||||||||||||||||||| | ||||| |||||||||||| ||||||    
T  32667456 ggggtttgctacaatagacccaccctttttcttgaaggtctattttagcaa 32667406  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 18236653 - 18236729
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggacacaaa 447  Q
    ||||||||||| ||||||||| |||  |||  |||||||||||| ||||||  |||||||||||  |||||||||||    
T  18236653 ggggtttgctataatagacccgctctattttgtgaaggtctattttagcaagatgcaccttttcctttggacacaaa 18236729  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 18237693 - 18237623
Alignment:
Q  373 ggtttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcaccttttcacttggaca 443  Q
    |||||| ||||||||||||||||  |||  |||||||||||| ||||||  |||||||||||  |||||||    
T  18237693 ggtttgttacaatagacccactctattttgtgaaggtctattttagcaagatgcaccttttcctttggaca 18237623  T

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Target: scaffold0676 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 3168 - 3220
Alignment:
Q  381 acaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    ||||||||||| |||||||||||||||||||||| ||||||  ||||||||||    
T  3168 acaatagacccgctcattttcatgaaggtctattttagcaagatgcacctttt 3220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 24728 - 24767
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctatt 414  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  24728 tttgctacaatagacccactcattttcatgaagttctatt 24767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 35003 - 35061
Alignment:
Q  375 tttgctacaatagacccactcattttcatgaaggtctattctagcaacctgcacctttt 433  Q
    |||||||||||||||||||   |||||||||||||||||| |||||   ||||||||||    
T  35003 tttgctacaatagacccaccttttttcatgaaggtctattttagcatgatgcacctttt 35061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 35865 - 35816
Alignment:
Q  371 ggggtttgctacaatagacccactcattttcatgaaggtctattctagca 420  Q
    ||||||||||||||||||||| |   |||||||||||||||||| |||||    
T  35865 ggggtttgctacaatagacccgccttttttcatgaaggtctattttagca 35816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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