View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5901_low_4 (Length: 470)
Name: NF5901_low_4
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5901_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 12284496 - 12284380
Alignment:
| Q |
16 |
caatcatcaattacttgagtatgttttgaagactagatcatgatacaaattagggttacatttcaacaaaaacaaatgttaatgcattnnnnnnntgttg |
115 |
Q |
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| T |
12284496 |
caatcatcaattacttgagtatgtttcaaagactagatcatgatacaaatta-ggtcacatttcaacaaaaacaaatgttaatgcattaaaaaaaagttg |
12284398 |
T |
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| Q |
116 |
tgcttacggtaaataaaa |
133 |
Q |
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| T |
12284397 |
tgcttacggtaaaaaaaa |
12284380 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 12283964 - 12283887
Alignment:
| Q |
222 |
tccagtagtgataaagcccatccacatattttccaaaatggcttaaggaacgcgaatttcttttgccaccctccaatt |
299 |
Q |
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|||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
12283964 |
tccagtagtgataagccccatcagcatattgtccaaaatggcttaaggaacgggaatttcttttcccaccctccaatt |
12283887 |
T |
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