View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5901_low_6 (Length: 370)
Name: NF5901_low_6
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5901_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 2090755 - 2090404
Alignment:
| Q |
1 |
cgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaatggggataaggaag |
100 |
Q |
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| T |
2090755 |
cgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaatggggataaggaag |
2090656 |
T |
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| Q |
101 |
cctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtgtctcgcact |
200 |
Q |
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| T |
2090655 |
cctaaatccttattcaaccatctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtgtctcgcact |
2090556 |
T |
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| Q |
201 |
catggcgtaatcgcattctaatcacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccattttatggcctaga |
300 |
Q |
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| T |
2090555 |
catggcgtaatcgcatcctaaccacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccattttatggcctaca |
2090456 |
T |
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| Q |
301 |
acaattttttaattggtgctcattagtgatgtgttgcaatgtcagttcaaga |
352 |
Q |
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| T |
2090455 |
acaattttttaattggtgctcattagtgatgtgttgcaatgtaagttcaaga |
2090404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 228
Target Start/End: Original strand, 2878654 - 2878809
Alignment:
| Q |
73 |
aaagaagaggacaatggggataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggat |
172 |
Q |
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| T |
2878654 |
aaagaagagaactatggggaaaaggaagcccagatccttcttcaacaatctccccataaatattcaaacgaaaatattttgtaggttgtcgttggaggat |
2878753 |
T |
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| Q |
173 |
caatcaaaggctatgtgtgtctcgcactcatggcgtaatcgcattctaatcacaac |
228 |
Q |
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| T |
2878754 |
caatcaaaagctatgtgtgtctcgaatgaatggcgtaatcacgttctaaacacaac |
2878809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 2727373 - 2727332
Alignment:
| Q |
166 |
gaaggatcaatcaaaggctatgtgtgtctcgcactcatggcg |
207 |
Q |
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| T |
2727373 |
gaaggatcaatcaaaagctatgtgtgtctcacactcatggcg |
2727332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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