View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5901_low_9 (Length: 243)
Name: NF5901_low_9
Description: NF5901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5901_low_9 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 24566432 - 24566657
Alignment:
| Q |
18 |
aaccctttccttctttctattttcttttatcaccaatatttcaccaaacaatgctaatgagcaagtattggacataaatggcaccccccttacccctggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566432 |
aaccctttccttctttctattttcttttatcaccaatatttcaccaaacaatgctattgagcaagtattggacataaatggcaccccccttacccctggt |
24566531 |
T |
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| Q |
118 |
ggccaatactacattttaccagaaagtgaaaaccctagtattggaggactaaccctaaacaaagttggtgattcaaattgtccagtaactgtcatacaag |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||| | | ||||||||||| ||| |||||| |
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| T |
24566532 |
ggccaatactacattttaccagaaagtgataaccctagtattggaggactaatcctaaacaaaattgatgatttagagtgtccagtaaccgtcgtacaag |
24566631 |
T |
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| Q |
218 |
atattactgtaataggtttaccagtt |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24566632 |
atattactgtaataggtttaccagtt |
24566657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 2916755 - 2916975
Alignment:
| Q |
23 |
tttccttctttctattttcttttatcaccaatatttcaccaaacaatgctaatgagcaagtattggacataaatggcaccccccttacccctggtggcca |
122 |
Q |
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|||||||||| |||||| |||||||||||||| ||||||||||||||||| | | ||||| || |||||| |||| |||||||||| ||||||| |||| |
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| T |
2916755 |
tttccttcttcctatttgcttttatcaccaatctttcaccaaacaatgctgctaaacaagtcttagacatacatggtaccccccttatccctggtagcca |
2916854 |
T |
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| Q |
123 |
atactacattttaccagaaagtgaaaaccctagtattggaggactaaccctaaacaaagttggtgattcaaattgtccagtaactgtcatacaagatatt |
222 |
Q |
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| T |
2916855 |
atactacatttttccagctagtgaaaaccctaacagtggaggactaaccttaaacaaagttggtgatttagaatgtccagtaactgtcctacaaaataat |
2916954 |
T |
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| Q |
223 |
actgtaataggtttaccagtt |
243 |
Q |
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| T |
2916955 |
gctatgataggtttaccagtt |
2916975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 2930362 - 2930563
Alignment:
| Q |
42 |
ttttatcaccaatatttcaccaaacaatgctaatgagcaagtattggacataaatggcaccccccttacccctggtggccaatactacattttaccagaa |
141 |
Q |
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||||||||||||| ||||||||||||||||| | | |||||||| |||||| |||| |||||||||| ||||||| |||||||||||||||| |||| |
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| T |
2930362 |
ttttatcaccaatctttcaccaaacaatgctgctaaacaagtattagacatacatggtaccccccttatccctggtagccaatactacatttttccagct |
2930461 |
T |
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| Q |
142 |
agtgaaaaccctagtattggaggactaaccctaaacaaagttggtgattcaaattgtccagtaactgtcatacaagatattactgtaataggtttaccag |
241 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||| ||| | | ||||||||||||||| ||||| ||| | || | ||||||||||||| |
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| T |
2930462 |
agtgaaaaccctaacagtggaggactaaccctaaacaaagttggtaatttagagtgtccagtaactgtcctacaaaataatgctatgataggtttaccag |
2930561 |
T |
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| Q |
242 |
tt |
243 |
Q |
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|| |
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| T |
2930562 |
tt |
2930563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 24554729 - 24554954
Alignment:
| Q |
18 |
aaccctttccttctttctattttcttttatcaccaatatttcaccaaacaatgctaatgagcaagtattggacataaatggcaccccccttacccctggt |
117 |
Q |
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||||||||| ||||| || ||| |||| ||||||||| | ||||||||||| ||| | | | |||||| |||| | |||| | ||| |||||||||||| |
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| T |
24554729 |
aaccctttctttcttcctttttactttcatcaccaatctctcaccaaacaacgctgttcaaccagtatttgacaaacatggtaaccctcttacccctggt |
24554828 |
T |
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| Q |
118 |
ggccaatactacattttaccagaaagtgaaaaccctagtattggaggactaaccctaaacaaagttggtgattcaaattgtccagtaactgtcatacaag |
217 |
Q |
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|||||||||||||||||||| |||||| |||||||| | |||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||| |
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| T |
24554829 |
aaccaatactacattttaccagcaagtgataaccctagcagtggaggactaaccctagacaaagttggtgattcagtgtgtccactaactgtcctacaaa |
24554928 |
T |
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| Q |
218 |
atattactgtaataggtttaccagtt |
243 |
Q |
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||| | |||||| |||||||||||| |
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| T |
24554929 |
ataatgctgtaactggtttaccagtt |
24554954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 20493365 - 20493429
Alignment:
| Q |
75 |
tgagcaagtattggacataaatggcaccccccttacccctggtggccaatactacattttaccag |
139 |
Q |
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|||||||||||| ||||||||||| | |||| || || ||||| ||||||||||||||||||| |
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| T |
20493365 |
tgagcaagtattagacataaatggtaaccccatttttccaggtggtcaatactacattttaccag |
20493429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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