View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5902_low_1 (Length: 225)
Name: NF5902_low_1
Description: NF5902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5902_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 46669367 - 46669552
Alignment:
| Q |
22 |
tgaagttgtgcagcttcaagaggatcatcatagtgaaatttttcagctaacaaattgcatccaatcaacacccaagcagcaacaaaaccacaaataatag |
121 |
Q |
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| T |
46669367 |
tgaagttgtgcagcttcaagaggatcatcatagtgaaatttctcagctaacaaattgcatccaatcaacacccaagcagcaacaaaaccacaaataatag |
46669466 |
T |
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| Q |
122 |
cagcccatggatccacaacagaacaccctgcagttatagcagcaaaaccaccaagcaaaccattgcacacatcactaacactccaa |
207 |
Q |
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| T |
46669467 |
cagcccatggatccacaacagaacaccctgcagttatagcagcaaaaccaccaagcaaaccattgcacacatcactaacactccaa |
46669552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 39641170 - 39641355
Alignment:
| Q |
22 |
tgaagttgtgcagcttcaagaggatcatcatagtgaaatttttcagctaacaaattgcatccaatcaacacccaagcagcaacaaaaccacaaataatag |
121 |
Q |
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|||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||||| |||||||| |||| || ||||||||||| | |
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| T |
39641170 |
tgaagttgtgcagcttcaagaggatcatcatattgaaacttctcagctaacatattgcatccaatcaaaacccaagcggcaatgaatccacaaataattg |
39641269 |
T |
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| Q |
122 |
cagcccatggatccacaacagaacaccctgcagttatagcagcaaaaccaccaagcaaaccattgcacacatcactaacactccaa |
207 |
Q |
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| T |
39641270 |
cagcccaaggatcaacaacagaacaacctgcagttatagcagcaaaaccacctaacaaaccattacaaacatcagtaacattccaa |
39641355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 35415489 - 35415598
Alignment:
| Q |
82 |
ccaatcaacacccaagcagcaacaaaaccacaaataatagcagcccatggatccacaacagaacaccctgcagttatagcagcaaaaccaccaagcaaac |
181 |
Q |
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|||||||| ||||| ||||||||||| ||||| | ||| || |||||||| |||||||||||||| || |||||||||||||||||||| ||||| |||| |
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| T |
35415489 |
ccaatcaaaacccacgcagcaacaaacccacacacaatcgcggcccatggttccacaacagaacaacccgcagttatagcagcaaaaccgccaagtaaac |
35415588 |
T |
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| Q |
182 |
cattgcacac |
191 |
Q |
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| T |
35415589 |
cgttacacac |
35415598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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