View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5903-Insertion-1 (Length: 900)

Name: NF5903-Insertion-1
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5903-Insertion-1
NF5903-Insertion-1
[»] chr1 (7 HSPs)
chr1 (9-811)||(5830725-5831538)
chr1 (803-897)||(5829824-5829914)
chr1 (12-88)||(5855215-5855291)
chr1 (21-95)||(13350903-13350977)
chr1 (12-105)||(34490299-34490393)
chr1 (12-97)||(5831643-5831728)
chr1 (40-97)||(13351024-13351081)
[»] chr3 (7 HSPs)
chr3 (774-838)||(51202611-51202674)
chr3 (21-95)||(19280317-19280391)
chr3 (12-97)||(27335307-27335392)
chr3 (22-97)||(18733595-18733670)
chr3 (40-116)||(9710852-9710929)
chr3 (21-116)||(3785860-3785956)
chr3 (9-95)||(22432438-22432524)
[»] chr7 (3 HSPs)
chr7 (21-116)||(28805138-28805234)
chr7 (21-119)||(31303348-31303447)
chr7 (24-97)||(32964874-32964947)
[»] chr6 (4 HSPs)
chr6 (12-95)||(9068516-9068599)
chr6 (21-118)||(23595050-23595148)
chr6 (30-116)||(7915595-7915683)
chr6 (21-116)||(22608259-22608355)
[»] chr8 (6 HSPs)
chr8 (21-116)||(1251591-1251687)
chr8 (12-97)||(15714608-15714693)
chr8 (21-116)||(31596693-31596789)
chr8 (21-84)||(38606754-38606817)
chr8 (21-71)||(26914631-26914681)
chr8 (22-79)||(15233338-15233395)
[»] chr5 (6 HSPs)
chr5 (12-88)||(22169568-22169643)
chr5 (16-115)||(35922607-35922707)
chr5 (21-97)||(15221684-15221760)
chr5 (12-81)||(13312709-13312778)
chr5 (21-110)||(22169361-22169451)
chr5 (21-79)||(36169337-36169395)
[»] chr2 (8 HSPs)
chr2 (40-118)||(30906185-30906264)
chr2 (21-95)||(1400689-1400763)
chr2 (21-116)||(34175042-34175138)
chr2 (21-88)||(33667435-33667502)
chr2 (22-105)||(30905955-30906039)
chr2 (21-116)||(43900426-43900522)
chr2 (587-632)||(6374081-6374126)
chr2 (21-84)||(41212426-41212489)
[»] chr4 (11 HSPs)
chr4 (21-97)||(17633255-17633331)
chr4 (21-87)||(1966758-1966823)
chr4 (21-118)||(8740906-8741004)
chr4 (21-79)||(42908687-42908745)
chr4 (64-118)||(23048934-23048989)
chr4 (21-88)||(24669293-24669360)
chr4 (21-79)||(16583716-16583773)
chr4 (23-116)||(19746939-19747033)
chr4 (23-116)||(19792773-19792867)
chr4 (40-116)||(9810658-9810735)
chr4 (62-114)||(19596680-19596733)


Alignment Details
Target: chr1 (Bit Score: 629; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 9 - 811
Target Start/End: Complemental strand, 5831538 - 5830725
Alignment:
Q  9 catgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaagtgtctaccaat 108  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  5831538 catgcaacaaacaaaatatgatcacacataccatatctttagttaactaaaatttttcagaatgttacaaaagggtgtactcattaaagtgtctaccaat 5831439  T
Q  109 ctttattcatgcataatgggccaatgaaaatcaattacctatatcaatgaaccatgcatgcgtgaataagataagaagtcttaggatgacataagaagag 208  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5831438 ctttattcatacataatgggccaatgaaaatcaattacctatatcaatgaaccatgcatgcgtgaataagataagaagtcttaggatgacataagaagag 5831339  T
Q  209 tgtatgtattttggacaaggaacacgatgaaggaatagacatgcgaattttttagacggtcccaatttgagtataccaagatatttaaaatgaaagaatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5831338 tgtatgtattttggacaaggaacacgatgaaggaatagacatgcgaattttttagacggtcccaatttgagtataccaagatatttaaaatgaaagaatg 5831239  T
Q  309 gaagagggcgatggctctaatatgaggacgtgaatcttttaattacgtccactctcgtacactattttttcatc-gaaannnnnnnngcgaggaagagaa 407  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||        |||| ||||||||    
T  5831238 gaaaagggcgatggctctaatatgaggacgtgaatcttttaattacgtccactctcgtacactattttttcatcttgaagtttttttgcgacgaagagaa 5831139  T
Q  408 tgataaaagacatgcta----atatacccttaaaaaagaaaggacatac--tatatatatttgctttccagcttcatccaaaaaagacagcaaaattcca 501  Q
    |||||||||||||||||    |||||||||||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5831138 tgataaaagacatgctaatatatatacccttaaaaaagaaaggacgtgctatatatatatttgctttccagcttcatccaaaaaagacagcaaaattcca 5831039  T
Q  502 aaccagtggccaatctgcctagggattcagttttattcgtcaaaggtgtatttttctattaatttgacatgttggactcgaaggtaa-gctactaaaact 600  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  5831038 aaccagtggccaatctgcctaaggattcagttttattcgtcaaaggtgtatttttctattaatttgacatgttggactcgaaggtaaggctactaaaaca 5830939  T
Q  601 ctagttttaggtccaccaacacataattatttattaag--nnnnnnnnnngacaaaaattatttgttaagttttataactaaaaagatcacatatataca 698  Q
    ||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5830938 ctagttttaggtccaccaacacataattatttattaagtttttttttttttacaaaaattatttgttaagttttataaataaaaagatcacatatataca 5830839  T
Q  699 c-aaaaaagatttcatataggaacttgttttaggtttcccgtactattaaaaattattatatcgaccatgtcatttgacaccaatctccacttaaattat 797  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5830838 ctaaaaaagatttcatatatgaacttgttttaggtttcccgtactattaaaaattattatatcgaccatgtcatttgacaccaatctccacttaaattat 5830739  T
Q  798 tttgaaaataaaaa 811  Q
    ||||||||||||||    
T  5830738 tttgaaaataaaaa 5830725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 803 - 897
Target Start/End: Complemental strand, 5829914 - 5829824
Alignment:
Q  803 aaataaaaaagagcacaaataatttcttgtttgctannnnnnnncccactgacaagcatgtaggtacgtactctgaacatgtgatcctctgagtc 897  Q
    ||||||||||||||||||||| ||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5829914 aaataaaaaagagcacaaata-tttcttgtttgctattttt---cccattgacaagcatgtaggtacgtactctgaacatgtgatcctctgagtc 5829824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 5855215 - 5855291
Alignment:
Q  12 gcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 88  Q
    ||||| ||| ||||||| ||||||||| ||||||||| ||||||| ||| ||||||||||| |||||||| ||||||    
T  5855215 gcaactaactaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaaagagtgtac 5855291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 13350977 - 13350903
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 95  Q
    |||| ||||||||||||| ||||||||| ||||||| ||| |||  |||||| ||||||||||||||| ||||||    
T  13350977 aaaacgtgatcacacataccatatatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaa 13350903  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 34490299 - 34490393
Alignment:
Q  12 gcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctacc 105  Q
    ||||| || |||||||| ||||||| | ||||||||| || |||| ||| ||||||||||| ||||||  ||||||| |||||| ||||||||||    
T  34490299 gcaactaaaaaaatgtggtcacacagaccatatattttgtaaactgaaatttttcagagtggtacaaagtggtgtacacattaagagtgtctacc 34490393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 5831643 - 5831728
Alignment:
Q  12 gcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 97  Q
    ||||| || ||||| || ||||||| | ||||||||| ||||| | ||| ||||||||||| |||||| |||||||| | ||||||    
T  5831643 gcaactaaaaaaatatggtcacacagaccatatatttggttaattgaaatttttcagagtgatacaaaggggtgtacacgttaaag 5831728  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 13351024 - 13351081
Alignment:
Q  40 catatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 97  Q
    ||||||||| ||||| | ||| ||||||||||| |||||| |||||||| ||||||||    
T  13351024 catatatttggttaagttaaatttttcagagtggtacaaaggggtgtacacattaaag 13351081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 774 - 838
Target Start/End: Complemental strand, 51202674 - 51202611
Alignment:
Q  774 gacaccaatctccacttaaattattttgaaaataaaaaagagcacaaataatttcttgtttgcta 838  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  51202674 gacaccaatctccacttaaattattttgaaaataaaaaagagcacaaa-catttcttgtttgcta 51202611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 19280317 - 19280391
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 95  Q
    |||||||  ||||||| | |||||||||  |||||||||||||||||||||| |||||| |||||||| ||||||    
T  19280317 aaaatgttgtcacacagaccatatatttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaa 19280391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 27335392 - 27335307
Alignment:
Q  12 gcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 97  Q
    ||||| || |||||||| ||||||||| |||||  || ||||||| |||||||||||| || |||||| |||||||| ||||||||    
T  27335392 gcaactaaaaaaatgtggtcacacataccatattattggttaactcaaaattttcagaatggtacaaaggggtgtacacattaaag 27335307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 18733595 - 18733670
Alignment:
Q  22 aaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 97  Q
    ||||||| |||| |||| ||||||||||||||||| ||| |||||||| || || ||| |||||||| ||||||||    
T  18733595 aaatgtggtcacccataccatatatttagttaacttaaatttttcagaatggtataaaggggtgtacacattaaag 18733670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 9710852 - 9710929
Alignment:
Q  40 catatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattc 116  Q
    ||||||||| ||||||| ||| ||||||||||| |||||| ||||||||  |||||  || |||||||||||||||||    
T  9710852 catatatttggttaactgaaatttttcagagtggtacaaaggggtgtacatattaagggtttctaccaatctttattc 9710929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 3785956 - 3785860
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag-tgtctaccaatctttattc 116  Q
    |||||||| ||||||| | |||| | || ||||||| ||| |||  |||||| |||||| |||||||| |||||| | |||||||||||||||||||    
T  3785956 aaaatgtggtcacacagaccataaaattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctaccaatctttattc 3785860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 22432438 - 22432524
Alignment:
Q  9 catgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 95  Q
    |||||||| || |||||||  ||||||| | |||||||||  || ||| ||| |||||| |||| ||||||||||||||| ||||||    
T  22432438 catgcaactaaaaaaatgtagtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaagggtgtacacattaa 22432524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 28805138 - 28805234
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattc 116  Q
    |||||||| ||||||||| ||||||||| ||||||| ||| ||||||||||| |||||| |||| ||| ||||||  ||||||||||||||||||||    
T  28805138 aaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagggtgtctaccaatctttattc 28805234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 31303447 - 31303348
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag-tgtctaccaatctttattcatg 119  Q
    |||||||| |||| || | ||| ||||| ||| ||| ||| ||||||||||| |||||| || ||||| |||||| | ||||||||||||||||||||||    
T  31303447 aaaatgtggtcacgcagaccatgtatttggttgactgaaatttttcagagtgatacaaatggatgtacacattaagggtgtctaccaatctttattcatg 31303348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 32964874 - 32964947
Alignment:
Q  24 atgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 97  Q
    ||||| ||||||| | ||||||| ||||||||| ||| |||| |||||| ||||||||||||||  ||||||||    
T  32964874 atgtggtcacacagaccatatatatagttaacttaaattttttagagtgatacaaaagggtgtatacattaaag 32964947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 9068516 - 9068599
Alignment:
Q  12 gcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 95  Q
    ||||| || |||||||| ||||||||| |||||||||  |||||||||| ||||||||||| ||||||||||||||| ||||||    
T  9068516 gcaactaaaaaaatgtggtcacacataccatatatttgattaactaaaatttttcagagtggtacaaaagggtgtacacattaa 9068599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 23595148 - 23595050
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaa-gtgtctaccaatctttattcat 118  Q
    ||||| || ||||||| | ||||||||||||||||| ||| |||  |||||| ||||||||||||||| ||||||| |||||| |||||||||| ||||    
T  23595148 aaaatatggtcacacagaccatatatttagttaacttaaattttcgagagtgatacaaaagggtgtacacattaaaggtgtctcccaatctttaatcat 23595050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 7915683 - 7915595
Alignment:
Q  30 tcacacatatcatatatttagttaactaaaaatttt-cagagtgttacaaaagggtgtactcattaaa-gtgtctaccaatctttattc 116  Q
    ||||||||| || ||||||  |||||| ||| |||| ||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||    
T  7915683 tcacacataccacatatttgattaactgaaattttttcagagtgatacaaaagggtgtacacattaaaggtgtctaccgatctttattc 7915595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 22608355 - 22608259
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag-tgtctaccaatctttattc 116  Q
    |||||||  ||||||| | ||||||||| ||||||||||| |||| |||||| |||||| |||||||| |||||| | | ||||||||| |||||||    
T  22608355 aaaatgtagtcacacagaccatatatttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaaggatatctaccaatttttattc 22608259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 1251591 - 1251687
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag-tgtctaccaatctttattc 116  Q
    |||||||| || |||| ||||||||||||||||||| ||| |||  |||||| |||||| |||||||| |||||| | |||||||||||||||||||    
T  1251591 aaaatgtggtctcacaaatcatatatttagttaactgaaattttcgagagtggtacaaatgggtgtacacattaaggatgtctaccaatctttattc 1251687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 15714693 - 15714608
Alignment:
Q  12 gcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 97  Q
    ||||| ||||||||||| ||||| | ||||||||||||| ||||| ||| ||||||||||| |||||||  ||||||  |||||||    
T  15714693 gcaactaacaaaatgtggtcacataaatcatatatttagctaactgaaatttttcagagtggtacaaaaatgtgtacatattaaag 15714608  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 31596789 - 31596693
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattc 116  Q
    |||||||| ||||||||| |||||||||  ||||||  || |||||| |||| ||||||  |||||||  ||||| |||||||||||||||||||||    
T  31596789 aaaatgtggtcacacataccatatatttgattaactgtaatttttcaaagtggtacaaagaggtgtacatattaagagtgtctaccaatctttattc 31596693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 38606817 - 38606754
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggt 84  Q
    ||||| || ||||||||| ||||||||||||||||| ||| ||||||||||| |||||| ||||    
T  38606817 aaaatatggtcacacataccatatatttagttaactgaaatttttcagagtggtacaaaggggt 38606754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 26914681 - 26914631
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagt 71  Q
    |||||||||||||||| |||||||||||||||| || ||| ||||||||||    
T  26914681 aaaatgtgatcacacaaatcatatatttagttagcttaaatttttcagagt 26914631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 15233338 - 15233395
Alignment:
Q  22 aaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 79  Q
    ||||||| ||||||| |  ||||||||| |||||||||| ||||||||||| ||||||    
T  15233338 aaatgtggtcacacaaactatatatttaattaactaaaatttttcagagtggtacaaa 15233395  T

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Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 22169568 - 22169643
Alignment:
Q  12 gcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 88  Q
    ||||| || |||||||| |||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||||    
T  22169568 gcaactaaaaaaatgtggtcacacatatcataaatttggttaactaaaaattttcagagtggtac-aaagggtgtac 22169643  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 35922707 - 35922607
Alignment:
Q  16 caaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttat 114  Q
    |||| |||||||| ||||||||| |||||||||  |||||| ||| ||||||||||| |||||| || ||||| ||||||  ||||||||| ||||||||    
T  35922707 caaaaaaaatgtggtcacacataccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtctaccgatctttat 35922608  T
Q  115 t 115  Q
    |    
T  35922607 t 35922607  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 15221684 - 15221760
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 97  Q
    |||||||| ||||||| | ||||||||||||||||| ||| |||||||| || |||||| | |||||| ||||||||    
T  15221684 aaaatgtggtcacacagaccatatatttagttaactgaaatttttcagaatgatacaaaggagtgtacacattaaag 15221760  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 13312709 - 13312778
Alignment:
Q  12 gcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaag 81  Q
    ||||| || |||||||| ||||||| ||||||||| | ||||||| ||| ||||||||||| ||||||||    
T  13312709 gcaactaaaaaaatgtggtcacacaaatcatatatatggttaactgaaatttttcagagtggtacaaaag 13312778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 22169451 - 22169361
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatct 110  Q
    |||||||||||||| ||  ||||||||||||||||| ||| |||  | | || ||||| ||||||||| ||||||  ||||||||||||||    
T  22169451 aaaatgtgatcacatattccatatatttagttaactgaaattttcaaaaatgatacaatagggtgtacacattaagggtgtctaccaatct 22169361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 36169395 - 36169337
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 79  Q
    |||||||| |||||| || ||||||||| ||||||||||| |||||| |||| ||||||    
T  36169395 aaaatgtggtcacacctaccatatatttggttaactaaaatttttcaaagtggtacaaa 36169337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 30906185 - 30906264
Alignment:
Q  40 catatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaa-gtgtctaccaatctttattcat 118  Q
    ||||||||| ||||||| ||| ||||||||||| ||||||||||||||| ||||||| |||| |||| ||||||||||||    
T  30906185 catatatttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaaaggtgtgtacccatctttattcat 30906264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 1400763 - 1400689
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 95  Q
    |||||||| ||||||||| ||||||||| ||||||| ||| |||||||| || ||||||||||||||| ||||||    
T  1400763 aaaatgtggtcacacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtacacattaa 1400689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 34175138 - 34175042
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcatt-aaagtgtctaccaatctttattc 116  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||| |  |||||| || ||||| |||| |||||||| ||| ||||||||||    
T  34175138 aaaatgtaatcacacaaatcatatatttagttaattgaaaattttcagaataatacaaagggatgtacacattaaaagtgtcaacctatctttattc 34175042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 33667435 - 33667502
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 88  Q
    |||||||| ||| ||||| ||||||||| ||||||||||| ||||||||||| |||||||| ||||||    
T  33667435 aaaatgtgttcatacataccatatatttggttaactaaaatttttcagagtggtacaaaagagtgtac 33667502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 30906039 - 30905955
Alignment:
Q  22 aaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctacc 105  Q
    ||||||| ||||||| |  |||||| | |||||||||||||||||||| ||||||||| || ||||| |||||| ||||||||||    
T  30906039 aaatgtggtcacacagacaatatatctggttaactaaaaattttcagaatgttacaaagggatgtacacattaagagtgtctacc 30905955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 43900522 - 43900426
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcatt-aaagtgtctaccaatctttattc 116  Q
    |||||||||||||||| | |||||||||||||| || ||| |||  |||||| ||||||| | | ||| |||| |||||||||| ||||||||||||    
T  43900522 aaaatgtgatcacacagaccatatatttagttacctgaaattttcgagagtggtacaaaatgatctacacattaaaagtgtctatcaatctttattc 43900426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 632
Target Start/End: Original strand, 6374081 - 6374126
Alignment:
Q  587 aagctactaaaactctagttttaggtccaccaacacataattattt 632  Q
    |||||||||||||||| |||||||||||||||||| | ||||||||    
T  6374081 aagctactaaaactctcgttttaggtccaccaacaaaaaattattt 6374126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 41212426 - 41212489
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggt 84  Q
    |||||||| ||||||| | ||||||||| ||||||| ||| ||||||||||| |||||| ||||    
T  41212426 aaaatgtggtcacacagaccatatatttggttaacttaaatttttcagagtggtacaaaggggt 41212489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 17633331 - 17633255
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 97  Q
    |||||||| ||||||| | ||||||||| ||||||||||| ||||| ||||| |||||| | |||||| ||||||||    
T  17633331 aaaatgtggtcacacagaccatatatttggttaactaaaatttttcggagtggtacaaatgagtgtacacattaaag 17633255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 1966823 - 1966758
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgta 87  Q
    |||||||| ||||||| | ||||||||| ||||||| ||| ||||||||||| ||||||||||||||    
T  1966823 aaaatgtggtcacacagaccatatatttggttaactgaaa-ttttcagagtggtacaaaagggtgta 1966758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 8740906 - 8741004
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag-tgtctaccaatctttattcat 118  Q
    ||||| || ||||||| |||||| ||||  |||||| |||||||| |||||| ||||||||  ||||| |||| ||| |||||||| ||||||||||||    
T  8740906 aaaatatggtcacacagatcatacatttgattaactgaaaattttgagagtgatacaaaagaatgtacacattgaagatgtctaccgatctttattcat 8741004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 42908687 - 42908745
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 79  Q
    |||||||| ||||||||| ||||||||| ||||||| ||| ||||||||||| ||||||    
T  42908687 aaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaa 42908745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 23048989 - 23048934
Alignment:
Q  64 ttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattcat 118  Q
    |||||||||||||||| |||||||| |||||| | |||||| ||||||||||||||    
T  23048989 ttcagagtgttacaaacgggtgtacacattaagaatgtctatcaatctttattcat 23048934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 24669293 - 24669360
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 88  Q
    |||||||| ||||||| | |||||||||  |||||| ||| ||||||||||| |||||| ||||||||    
T  24669293 aaaatgtggtcacacagaccatatatttgattaacttaaatttttcagagtggtacaaaggggtgtac 24669360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 16583716 - 16583773
Alignment:
Q  21 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 79  Q
    |||||||||||||| | | |||||||| ||||||||||||||||||| | |||||||||    
T  16583716 aaaatgtgatcacataaaacatatatt-agttaactaaaaattttcaaaatgttacaaa 16583773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 19746939 - 19747033
Alignment:
Q  23 aatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcatt-aaagtgtctaccaatctttattc 116  Q
    |||||| ||| ||| | ||| ||||||||||||| ||| |||  ||| || |||||| |||||||| |||| ||||||||||| |||||||||||    
T  19746939 aatgtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctactaatctttattc 19747033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 19792867 - 19792773
Alignment:
Q  23 aatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcatt-aaagtgtctaccaatctttattc 116  Q
    |||||| ||| ||| | ||| ||||||||||||| ||| |||  ||| || |||||| |||||||| |||| ||||||||||| |||||||||||    
T  19792867 aatgtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctactaatctttattc 19792773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 9810735 - 9810658
Alignment:
Q  40 catatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattc 116  Q
    |||||||||| |||||| ||| |||||| |||| |||||||||||||||  |||||  ||||| ||| ||||||||||    
T  9810735 catatatttaattaactgaaatttttcatagtggtacaaaagggtgtacatattaagggtgtcaacctatctttattc 9810658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 19596733 - 19596680
Alignment:
Q  62 ttttcagagtgttacaaaagggtgtactcattaaag-tgtctaccaatctttat 114  Q
    ||||||||||| |||||| |||||||| |||||||| |||||| ||||||||||    
T  19596733 ttttcagagtggtacaaaggggtgtacacattaaagatgtctatcaatctttat 19596680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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