View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5903-Insertion-3 (Length: 603)
Name: NF5903-Insertion-3
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 9 - 603
Target Start/End: Complemental strand, 39113792 - 39113198
Alignment:
| Q |
9 |
cccaacaccaacactggacttgtcaaccatgcgaacattgtattgttcatacactcttacgcgattctcagcccaccaattttctgcttgtttctcacta |
108 |
Q |
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| T |
39113792 |
cccaacaccaacactggacttgtcaaccatgcgaacattgtattgttcatatactcttacgcgattctcagcccaccaattttctgcttgtttctcacta |
39113693 |
T |
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| Q |
109 |
aaccgcttccgactgcattcaacaaagttaaaactcagattataaaattgctaatcatgaaatactgtataattatcttaatttgtcccaccagatacca |
208 |
Q |
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| T |
39113692 |
aaccgcttccgactgcattcaacaaagttaaaactcagattataaaattgctaatcatgaaatactgtataattatcttaatttgtcccaccagatacca |
39113593 |
T |
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| Q |
209 |
aattgcagaataaaacattatgattttcaagatatgttgaatatggcaataactacctgtatattcttgacattattctgtcccccacagattagtgttt |
308 |
Q |
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| T |
39113592 |
aattgcagaataaaacattatgattttcaagatatgttgaatatggcaataactacctgtatattcttgacattattctgtcccccacagattagtgttt |
39113493 |
T |
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| Q |
309 |
gctgaggcaaacagtggggaactgagccaagaaaatgaatcatgttgctccaaaaatggcaacatgaatgtcatattctaccatttttcctttttcttag |
408 |
Q |
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| T |
39113492 |
gctgaggcaaacagtggggaactgagcaaagaaaatgaatcatgttgctccaaaaatggcaacatgaatgtcatattctaccatttttcctttttcttag |
39113393 |
T |
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| Q |
409 |
aagtatatcttattctttagtaccaaattttgcagatgacgttctgcaagttaacagcaaaatgtctgcagagcaatacatacctgaagcgaactctctt |
508 |
Q |
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| T |
39113392 |
aagtatatcttattctttagtaccaaattttgcagatgacgttctgcaagttaacagcaaaatgtctgcagagcaatacatacctgaagcgaactctctt |
39113293 |
T |
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| Q |
509 |
aagatctattacacctcctggtagggacgtgagtgtaatatatacaccaggttcatcttgctcaacccattcagtctcactacgggattcactat |
603 |
Q |
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| T |
39113292 |
aagatctattacacctcctggtagggacgtgagtgtaatatatacaccaggttcatcttgctcaacccattcagtctcactacgggattcactat |
39113198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 11292688 - 11292584
Alignment:
| Q |
25 |
gacttgtcaaccatgcgaacattgtattgttcatacactcttacgcgattctcagcccaccaattttctgcttgtttctcactaaaccgcttccgactgc |
124 |
Q |
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| T |
11292688 |
gacttgtcaaccatacgcacattgtactgttcatatactcttatccgattctcagcccaccaatgttctgcttgtttttcactaaaccgcttgcgactgc |
11292589 |
T |
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| Q |
125 |
attca |
129 |
Q |
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| T |
11292588 |
attca |
11292584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 487 - 595
Target Start/End: Complemental strand, 11292371 - 11292263
Alignment:
| Q |
487 |
catacctgaagcgaactctcttaagatctattacacctcctggtagggacgtgagtgtaatatatacaccaggttcatcttgctcaacccattcagtctc |
586 |
Q |
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|||||||||| ||||| ||||||||||||||| |||| |||| ||||| || || ||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
11292371 |
catacctgaatcgaaccctcttaagatctattgcaccgcctgcgagggaagtaagagtaatatatacaccaggctcatcttgctcaacccattcgctctc |
11292272 |
T |
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| Q |
587 |
actacggga |
595 |
Q |
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| T |
11292271 |
attacggga |
11292263 |
T |
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