View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5903-Insertion-4 (Length: 521)

Name: NF5903-Insertion-4
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5903-Insertion-4
NF5903-Insertion-4
[»] scaffold0170 (2 HSPs)
scaffold0170 (128-521)||(7975-8389)
scaffold0170 (12-56)||(7859-7903)
[»] chr8 (4 HSPs)
chr8 (132-517)||(25130628-25131033)
chr8 (146-221)||(9670680-9670751)
chr8 (12-56)||(25131463-25131507)
chr8 (146-221)||(39531507-39531586)
[»] chr1 (11 HSPs)
chr1 (256-517)||(13569395-13569656)
chr1 (213-469)||(18542373-18542630)
chr1 (132-386)||(10801921-10802193)
chr1 (133-221)||(13569678-13569766)
chr1 (377-517)||(10800793-10800925)
chr1 (163-248)||(41752151-41752243)
chr1 (182-221)||(18542643-18542682)
chr1 (146-210)||(44586413-44586473)
chr1 (213-270)||(44586332-44586389)
chr1 (12-56)||(10802277-10802321)
chr1 (12-56)||(13569851-13569895)
[»] chr4 (3 HSPs)
chr4 (233-517)||(43301138-43301411)
chr4 (213-267)||(43301685-43301739)
chr4 (169-221)||(43301752-43301804)
[»] scaffold0001 (2 HSPs)
scaffold0001 (132-404)||(141647-141941)
scaffold0001 (399-517)||(142251-142368)
[»] chr6 (3 HSPs)
chr6 (395-517)||(24500633-24500754)
chr6 (213-267)||(20623869-20623923)
chr6 (169-221)||(20623804-20623856)
[»] chr3 (3 HSPs)
chr3 (157-221)||(43585446-43585510)
chr3 (146-221)||(31986142-31986217)
chr3 (157-214)||(53707490-53707547)
[»] chr5 (1 HSPs)
chr5 (161-218)||(22541394-22541451)


Alignment Details
Target: scaffold0170 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 128 - 521
Target Start/End: Original strand, 7975 - 8389
Alignment:
Q  128 gttgctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatcc------------- 214  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  7975 gttgctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattttgattt 8074  T
Q  215 --------ctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattctatgttgtataagttgatcaagt 306  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8075 ctcaatccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattctatgttgtataagttgatcaagt 8174  T
Q  307 ccaatgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatact 406  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  8175 ccaatgtaataacttgaataatgagaaggtaaggatttcttaggattattacttcaagaggctcaaattttcctaaatagcttaaaacaagttaaatact 8274  T
Q  407 ttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttgggcgcctgtt 506  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8275 ttcatggatgtgtgaataaattagaaactttgctcattgtttgatatatcaatatagcataattgttataaccactttgtagtatttttgggcgcctgtt 8374  T
Q  507 ggtgtgtttgtttgg 521  Q
    |||||||||||||||    
T  8375 ggtgtgtttgtttgg 8389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 7859 - 7903
Alignment:
Q  12 cctctcttaatttacgcctcttcctctctcaactatcagtctcca 56  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||    
T  7859 cctctcttaatttgcgcctcttcctctctcaactctcagtctcca 7903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 132 - 517
Target Start/End: Complemental strand, 25131033 - 25130628
Alignment:
Q  132 ctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt---------- 221  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||              
T  25131033 ctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatccctaattttgattttcca 25130934  T
Q  222 -----------agaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtcca 309  Q
               ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25130933 aatcctaatttagaattgttaattattctctttgtttgtccaaagagaattgttaatttcagaattttgattctactgttgtataagttgatcaagtcca 25130834  T
Q  310 atgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttc 409  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  25130833 atgtaataacttgaataacgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagtctaaaacaagttaaatactttc 25130734  T
Q  410 atggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttgggcgcctgttggt 509  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  25130733 atgaatgtgtgaataaattagaaactttgctgattgtttgatatagcaatatagcataattgttataaccactatgtagtatttttgg--gcctgttggt 25130636  T
Q  510 gtgtttgt 517  Q
    ||||||||    
T  25130635 gtgtttgt 25130628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 9670751 - 9670680
Alignment:
Q  146 ttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 221  Q
    |||||||||||||    ||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||    
T  9670751 ttgttaatgggtg----aatgagttgattattcaaattccaaaccgcaatttagaattgttgataatccctaattt 9670680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 25131507 - 25131463
Alignment:
Q  12 cctctcttaatttacgcctcttcctctctcaactatcagtctcca 56  Q
    ||||||| ||||| |||||||||||||||||||| | ||||||||    
T  25131507 cctctctcaatttgcgcctcttcctctctcaactcttagtctcca 25131463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 39531507 - 39531586
Alignment:
Q  146 ttgttaatgggtgaatcaa-----tgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 221  Q
    |||||||||||||||||||     ||||||||||||| |||||| ||||| |||||||  |||||||||||| || |||||    
T  39531507 ttgttaatgggtgaatcaaggagttgagttgattattcaaattcaaaactacaattta-gattgttgattattcccaattt 39531586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 256 - 517
Target Start/End: Complemental strand, 13569656 - 13569395
Alignment:
Q  256 agaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtccaatgtaataacttgaataatgagaatgtaaggatttcttaggatta 354  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  13569656 agaattgttaatttcagaattttgattctactgttgtataagttgatcaagtccaatgtaataacttggataacgagaatgtaaggatttcttaggatta 13569557  T
Q  355 ttacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatata 454  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13569556 ttacttcaagaggctcaaattttggtaaatagtctaaaacaagttaaatactttcatgaatgtgtgaataaattagaaactttgctgattgtttgatata 13569457  T
Q  455 gcaatatagcataattgttataaccactttgtagtatttttgggcgcctgttggtgtgtttgt 517  Q
    ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  13569456 gcaatatagcataattgttataaccactttgtagtattttttgg-gcatgttggtgtgtttgt 13569395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 213 - 469
Target Start/End: Complemental strand, 18542630 - 18542373
Alignment:
Q  213 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtccaat 311  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  18542630 ccctaatttagaattgttgattcttctctttgtttatccaaagagaattgttaatttcagaattttgattctaatgctgtataagttgatcaagtccaat 18542531  T
Q  312 gtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttcat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||    
T  18542530 gtaataacttgaataatgagaatgtaaggatttcttaggattattacttcagaaggctcaaattttggtaaatagtctaaaacaagttaaatactttcat 18542431  T
Q  412 ggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataat 469  Q
    | |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  18542430 gaatgtgtgaataaattagaaactttgttgattgtttgatataacaatatagcataat 18542373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 132 - 386
Target Start/End: Complemental strand, 10802193 - 10801921
Alignment:
Q  132 ctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt---------- 221  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||              
T  10802193 ctgaatgttgatgcttgttaaggagtgaatcaatgagttgattatttaaattcaaaactgcaatttataattattgattatccctaattttgatttccca 10802094  T
Q  222 -----------agaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtcca 309  Q
               ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10802093 aaccctaatttagaattgttaattcttctctttctttgtccaaagagaattgttaatttcagaattttgattctactgttgtataagttgatcaagtcca 10801994  T
Q  310 atgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatag 386  Q
    |||||||||||||||    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10801993 atgtaataacttgaa----gagaatgtaaggatttcttaggatttttacttcaagaggctcaaattttggtaaatag 10801921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 13569766 - 13569678
Alignment:
Q  133 tgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 221  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13569766 tgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatccctaattt 13569678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 10800925 - 10800793
Alignment:
Q  377 tggtaaatagcttaaaacaagttaaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttata 476  Q
    ||||||||||  |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||        |||||||||||||||    
T  10800925 tggtaaatagtctaaaacaagttaaatactttcatgaatgtgtgaataaattagaaacgttgctgattgtttgatat--------agcataattgttata 10800834  T
Q  477 accactttgtagtatttttgggcgcctgttggtgtgtttgt 517  Q
    |||| ||||||||||||||  | ||||||||||||||||||    
T  10800833 accaatttgtagtatttttttgggcctgttggtgtgtttgt 10800793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 41752151 - 41752243
Alignment:
Q  163 aatgagttgattatttaaattccaaactgcaatttataattgttgattat-------ccctaatttagaattgttgattcttctctttgtttg 248  Q
    ||||||||||||||| |||||| |||| |||||||| ||||||| |||||       |||||||| | |||||||||||||||||||||||||    
T  41752151 aatgagttgattattcaaattctaaaccgcaatttagaattgttaattatccccaaaccctaattcataattgttgattcttctctttgtttg 41752243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 18542682 - 18542643
Alignment:
Q  182 ttccaaactgcaatttataattgttgattatccctaattt 221  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  18542682 ttccaaagtgcaatttataattgttgattatccctaattt 18542643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 44586473 - 44586413
Alignment:
Q  146 ttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgatt 210  Q
    |||||||||||||    ||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  44586473 ttgttaatgggtg----aatgagttgattattcaaattccaaaccgcaatttagaattgttgatt 44586413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 44586389 - 44586332
Alignment:
Q  213 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttc 270  Q
    |||||||| |||||||| |||||||||| ||||||||||| ||||||| ||| |||||    
T  44586389 ccctaattcagaattgtcgattcttctccttgtttgtccagagagaatcgttgatttc 44586332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 10802321 - 10802277
Alignment:
Q  12 cctctcttaatttacgcctcttcctctctcaactatcagtctcca 56  Q
    ||||||| ||||| |||||||||||||||||||| | ||||||||    
T  10802321 cctctctcaatttgcgcctcttcctctctcaactcttagtctcca 10802277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 13569895 - 13569851
Alignment:
Q  12 cctctcttaatttacgcctcttcctctctcaactatcagtctcca 56  Q
    ||||||| ||||| |||||||||||||||||||| | ||||||||    
T  13569895 cctctctcaatttgcgcctcttcctctctcaactcttagtctcca 13569851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 233 - 517
Target Start/End: Complemental strand, 43301411 - 43301138
Alignment:
Q  233 ttcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtccaatgtaataacttgaataatgag 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        
T  43301411 ttcttctctttgtttgtccaaagagaattgttaatttcagaattttgattctactgttgtataagttgatcaagtccaatgtaataacttgaataa---- 43301316  T
Q  332 aatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttcatggatgtgtgaataaattaaa 431  Q
           |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||| |||||||||||||||| |    
T  43301315 -------ggatttcttaggattattacttcaagaggctcaaattttggtaaatggtctaaaacaagttaaatactttcatgaatgtgtgaataaattaga 43301223  T
Q  432 aactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttgggcgcctgttggtgtgtttgt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  43301222 aactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtattttttgg-gcctgttggtgtgtttgt 43301138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 43301739 - 43301685
Alignment:
Q  213 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43301739 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 43301685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 43301804 - 43301752
Alignment:
Q  169 ttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 221  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  43301804 ttgattatttaaatacaaaactgcaatttataattgttgattatccctaattt 43301752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 132 - 404
Target Start/End: Original strand, 141647 - 141941
Alignment:
Q  132 ctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatcc----------------- 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||                      
T  141647 ctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatctttaattttgatttccca 141746  T
Q  215 ----ctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtcca 309  Q
        ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||| ||||    
T  141747 aactctaatttagaattgttgattcttctctttgtttgtccaaagagaatttttaatttcagaattttgattctactattgcataagttgatcaactcca 141846  T
Q  310 atgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaata 404  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  141847 atgtaataacttgaataacgagaatataaggatttcttaggattattacttcaagaggctcaaattttggtaaatagtttaaaacaagttaaata 141941  T

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Target: scaffold0001; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 399 - 517
Target Start/End: Original strand, 142251 - 142368
Alignment:
Q  399 taaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttggg 498  Q
    |||||| ||||||| | |||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||    
T  142251 taaatattttcatgaacgtgtgaataaattagaaactttgctgattgtttaatattgcattatagcataattgttataaccactttgtagtattttttgg 142350  T
Q  499 cgcctgttggtgtgtttgt 517  Q
     ||||||||||||||||||    
T  142351 -gcctgttggtgtgtttgt 142368  T

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Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 395 - 517
Target Start/End: Complemental strand, 24500754 - 24500633
Alignment:
Q  395 aagttaaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttt 494  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24500754 aagttaaatactttcatgaatgtgtcaataaattagaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttt 24500655  T
Q  495 tgggcgcctgttggtgtgtttgt 517  Q
    | || ||||||||||||||||||    
T  24500654 ttgg-gcctgttggtgtgtttgt 24500633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 20623869 - 20623923
Alignment:
Q  213 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20623869 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 20623923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 20623804 - 20623856
Alignment:
Q  169 ttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 221  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  20623804 ttgattatttaaatacaaaactgcaatttataattgttgattatccctaattt 20623856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 43585446 - 43585510
Alignment:
Q  157 tgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 221  Q
    ||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||    
T  43585446 tgaatcaatgagttgattattcaaattccaaaccacaatttagaattgttgattatccctaattt 43585510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 31986142 - 31986217
Alignment:
Q  146 ttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 221  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||| |||||    
T  31986142 ttgttaatggatgaatcaatgagttgattattcaaatttcaaaccacaatttagaattgttgattatccccaattt 31986217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 53707490 - 53707547
Alignment:
Q  157 tgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatcc 214  Q
    ||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||    
T  53707490 tgaatcaatgagttgattattcaaatttcaaaccacaatttagaattgttgattatcc 53707547  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 22541394 - 22541451
Alignment:
Q  161 tcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaa 218  Q
    ||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||    
T  22541394 tcaatgagttgattattcaaattccaaaccacaatttagaattgttgattatccctaa 22541451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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