View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5903-Insertion-5 (Length: 283)
Name: NF5903-Insertion-5
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 31055035 - 31055310
Alignment:
| Q |
8 |
atctataatacatgttaatttgtttcacttgcagatacctataaatggttctggtttgattgagtataggtgtcacccctattggaaccaaaaatactgt |
107 |
Q |
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| T |
31055035 |
atctataatacatgttaatttgtttcacttgcagatacctataaatggttctggtttgattgagtataggtgtcacccctattggaaccaaaaatactgt |
31055134 |
T |
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| Q |
108 |
ccgtctcatgaacatgataatacatctcgctgttgtagctgtgaaagattagaggtactaatannnnnnnnnnctcctttttaagatcatggaaataaca |
207 |
Q |
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| T |
31055135 |
ccgtctcatgaacatgataatacatctcgctgttgtagctgtgaaagattagaggtactaatattttttttttctcctttttaagatcatggaaataaca |
31055234 |
T |
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| Q |
208 |
ttttgctatatatatgtttctcttttctgatatttatatttttaattaccttctccttgaagtctcggggcgaaag |
283 |
Q |
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| T |
31055235 |
ttttgctatatatatgtttctcttttctgatatttatatttttaattaccttctccttgaagtctcggggcgaaag |
31055310 |
T |
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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 34743589 - 34743454
Alignment:
| Q |
34 |
acttgcagatacctataaatggttctggtttgattgagtataggtgtcacccctattggaaccaaaaatactgtccgtctcatgaacatgataatacatc |
133 |
Q |
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|||| ||||| |||||||||| | ||||||||||||||||||| || ||||||| |||| |||||| || ||||| ||||||||| ||||||| ||| | |
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| T |
34743589 |
actttcagattcctataaatgctgctggtttgattgagtatagatgccaccccttttggtcccaaaagtattgtccatctcatgaatatgataacacagc |
34743490 |
T |
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| Q |
134 |
tcgctgttgtagctgtgaaagattagaggtactaat |
169 |
Q |
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| T |
34743489 |
tcgctgctgtagttgtgaaagattagaggtactaat |
34743454 |
T |
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