View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5903_high_10 (Length: 261)
Name: NF5903_high_10
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903_high_10 |
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| [»] scaffold0170 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0001 (2 HSPs) |
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Alignment Details
Target: scaffold0170 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 8382 - 8122
Alignment:
| Q |
1 |
aacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcacaca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| |
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| T |
8382 |
aacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgatatatcaaacaatgagcaaagtttctaatttattcacaca |
8283 |
T |
|
| Q |
101 |
tccatgaaagtatttaacttgttttaagctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8282 |
tccatgaaagtatttaacttgttttaagctatttaggaaaatttgagcctcttgaagtaataatcctaagaaatccttaccttctcattattcaagttat |
8183 |
T |
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| Q |
201 |
tacattggacttgatcaacttatacaacatagaatcaaaattctgaaattaacaattctct |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8182 |
tacattggacttgatcaacttatacaacatagaatcaaaattctgaaattaacaattctct |
8122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 25130631 - 25130890
Alignment:
| Q |
1 |
aacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcacaca |
100 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25130631 |
aacacaccaacaggc--ccaaaaatactacatagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttctaatttattcacaca |
25130728 |
T |
|
| Q |
101 |
tccatgaaagtatttaacttgttttaagctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagttat |
200 |
Q |
| |
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| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25130729 |
ttcatgaaagtatttaacttgttttagactatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcgttattcaagttat |
25130828 |
T |
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| Q |
201 |
tacattggacttgatcaacttatacaaca-tagaatcaaaattctgaaattaacaattctct |
261 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25130829 |
tacattggacttgatcaacttatacaacagtagaatcaaaattctgaaattaacaattctct |
25130890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 13569398 - 13569656
Alignment:
| Q |
1 |
aacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcacaca |
100 |
Q |
| |
|
|||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13569398 |
aacacaccaacatgc-ccaaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttctaatttattcacaca |
13569496 |
T |
|
| Q |
101 |
tccatgaaagtatttaacttgttttaagctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagttat |
200 |
Q |
| |
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| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
13569497 |
ttcatgaaagtatttaacttgttttagactatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcgttatccaagttat |
13569596 |
T |
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| Q |
201 |
tacattggacttgatcaacttatacaaca-tagaatcaaaattctgaaattaacaattct |
259 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13569597 |
tacattggacttgatcaacttatacaacagtagaatcaaaattctgaaattaacaattct |
13569656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 46 - 261
Target Start/End: Original strand, 18542373 - 18542589
Alignment:
| Q |
46 |
attatgctatattgctatatcaaacaatcagcaaagtttttaatttattcacacatccatgaaagtatttaacttgttttaagctatttaccaaaatttg |
145 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18542373 |
attatgctatattgttatatcaaacaatcaacaaagtttctaatttattcacacattcatgaaagtatttaacttgttttagactatttaccaaaatttg |
18542472 |
T |
|
| Q |
146 |
agcctcttgaagtaataatcctaagaaatccttacattctcattattcaagttattacattggacttgatcaacttatacaaca-tagaatcaaaattct |
244 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
18542473 |
agccttctgaagtaataatcctaagaaatccttacattctcattattcaagttattacattggacttgatcaacttatacagcattagaatcaaaattct |
18542572 |
T |
|
| Q |
245 |
gaaattaacaattctct |
261 |
Q |
| |
|
||||||||||||||||| |
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| T |
18542573 |
gaaattaacaattctct |
18542589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 129 - 261
Target Start/End: Original strand, 10801921 - 10802050
Alignment:
| Q |
129 |
ctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagttattacattggacttgatcaacttatacaac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10801921 |
ctatttaccaaaatttgagcctcttgaagtaaaaatcctaagaaatccttacattctc----ttcaagttattacattggacttgatcaacttatacaac |
10802016 |
T |
|
| Q |
229 |
a-tagaatcaaaattctgaaattaacaattctct |
261 |
Q |
| |
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| |||||||||||||||||||||||||||||||| |
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| T |
10802017 |
agtagaatcaaaattctgaaattaacaattctct |
10802050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 10800796 - 10800925
Alignment:
| Q |
1 |
aacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcacaca |
100 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
10800796 |
aacacaccaacaggcccaaaaaaatactacaaattggttataacaattatgct--------atatcaaacaatcagcaacgtttctaatttattcacaca |
10800887 |
T |
|
| Q |
101 |
tccatgaaagtatttaacttgttttaagctatttacca |
138 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
10800888 |
ttcatgaaagtatttaacttgttttagactatttacca |
10800925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 43301141 - 43301390
Alignment:
| Q |
1 |
aacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcacaca |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
43301141 |
aacacaccaacaggc-ccaaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttctaatttattcacaca |
43301239 |
T |
|
| Q |
101 |
tccatgaaagtatttaacttgttttaagctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagttat |
200 |
Q |
| |
|
| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
43301240 |
ttcatgaaagtatttaacttgttttagaccatttaccaaaatttgagcctcttgaagtaataatcctaagaaatcc-----------ttattcaagttat |
43301328 |
T |
|
| Q |
201 |
tacattggacttgatcaacttatacaaca-tagaatcaaaattctgaaattaacaattctct |
261 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43301329 |
tacattggacttgatcaacttatacaacagtagaatcaaaattctgaaattaacaattctct |
43301390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 111 - 261
Target Start/End: Complemental strand, 141941 - 141790
Alignment:
| Q |
111 |
tatttaacttgttttaagctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagttattacattggac |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
141941 |
tatttaacttgttttaaactatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttatattctcgttattcaagttattacattggag |
141842 |
T |
|
| Q |
211 |
ttgatcaacttatacaaca-tagaatcaaaattctgaaattaacaattctct |
261 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
141841 |
ttgatcaacttatgcaatagtagaatcaaaattctgaaattaaaaattctct |
141790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 142365 - 142251
Alignment:
| Q |
1 |
aacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcacaca |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
142365 |
aacacaccaacaggc-ccaaaaaatactacaaagtggttataacaattatgctataatgcaatattaaacaatcagcaaagtttctaatttattcacacg |
142267 |
T |
|
| Q |
101 |
tccatgaaagtattta |
116 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
142266 |
ttcatgaaaatattta |
142251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 24500636 - 24500754
Alignment:
| Q |
1 |
aacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcacaca |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
24500636 |
aacacaccaacaggc-ccaaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttctaatttattgacaca |
24500734 |
T |
|
| Q |
101 |
tccatgaaagtatttaactt |
120 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
24500735 |
ttcatgaaagtatttaactt |
24500754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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