View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5903_high_11 (Length: 258)

Name: NF5903_high_11
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5903_high_11
NF5903_high_11
[»] scaffold0170 (2 HSPs)
scaffold0170 (138-231)||(7975-8068)
scaffold0170 (22-66)||(7859-7903)
[»] chr8 (4 HSPs)
chr8 (142-231)||(25130944-25131033)
chr8 (156-231)||(9670680-9670751)
chr8 (22-66)||(25131463-25131507)
chr8 (156-231)||(39531507-39531586)
[»] chr1 (7 HSPs)
chr1 (143-231)||(13569678-13569766)
chr1 (142-231)||(10802104-10802193)
chr1 (192-231)||(18542643-18542682)
chr1 (156-220)||(44586413-44586473)
chr1 (173-225)||(41752151-41752203)
chr1 (22-66)||(10802277-10802321)
chr1 (22-66)||(13569851-13569895)
[»] scaffold0001 (1 HSPs)
scaffold0001 (142-223)||(141647-141728)
[»] chr3 (3 HSPs)
chr3 (167-231)||(43585446-43585510)
chr3 (156-231)||(31986142-31986217)
chr3 (167-224)||(53707490-53707547)
[»] chr6 (1 HSPs)
chr6 (179-231)||(20623804-20623856)
[»] chr4 (1 HSPs)
chr4 (179-231)||(43301752-43301804)
[»] chr5 (1 HSPs)
chr5 (171-228)||(22541394-22541451)


Alignment Details
Target: scaffold0170 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 7975 - 8068
Alignment:
Q  138 gttgctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 231  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7975 gttgctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 8068  T

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Target: scaffold0170; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 7859 - 7903
Alignment:
Q  22 cctctcttaatttacgcctcttcctctctcaactatcagtctcca 66  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||    
T  7859 cctctcttaatttgcgcctcttcctctctcaactctcagtctcca 7903  T

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Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 25131033 - 25130944
Alignment:
Q  142 ctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 231  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25131033 ctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatccctaattt 25130944  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 9670751 - 9670680
Alignment:
Q  156 ttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 231  Q
    |||||||||||||    ||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||    
T  9670751 ttgttaatgggtg----aatgagttgattattcaaattccaaaccgcaatttagaattgttgataatccctaattt 9670680  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 25131507 - 25131463
Alignment:
Q  22 cctctcttaatttacgcctcttcctctctcaactatcagtctcca 66  Q
    ||||||| ||||| |||||||||||||||||||| | ||||||||    
T  25131507 cctctctcaatttgcgcctcttcctctctcaactcttagtctcca 25131463  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 39531507 - 39531586
Alignment:
Q  156 ttgttaatgggtgaatcaa-----tgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 231  Q
    |||||||||||||||||||     ||||||||||||| |||||| ||||| |||||||  |||||||||||| || |||||    
T  39531507 ttgttaatgggtgaatcaaggagttgagttgattattcaaattcaaaactacaattta-gattgttgattattcccaattt 39531586  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 13569766 - 13569678
Alignment:
Q  143 tgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 231  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13569766 tgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatccctaattt 13569678  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 10802193 - 10802104
Alignment:
Q  142 ctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 231  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  10802193 ctgaatgttgatgcttgttaaggagtgaatcaatgagttgattatttaaattcaaaactgcaatttataattattgattatccctaattt 10802104  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 18542682 - 18542643
Alignment:
Q  192 ttccaaactgcaatttataattgttgattatccctaattt 231  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  18542682 ttccaaagtgcaatttataattgttgattatccctaattt 18542643  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 44586473 - 44586413
Alignment:
Q  156 ttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgatt 220  Q
    |||||||||||||    ||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  44586473 ttgttaatgggtg----aatgagttgattattcaaattccaaaccgcaatttagaattgttgatt 44586413  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 41752151 - 41752203
Alignment:
Q  173 aatgagttgattatttaaattccaaactgcaatttataattgttgattatccc 225  Q
    ||||||||||||||| |||||| |||| |||||||| ||||||| ||||||||    
T  41752151 aatgagttgattattcaaattctaaaccgcaatttagaattgttaattatccc 41752203  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 10802321 - 10802277
Alignment:
Q  22 cctctcttaatttacgcctcttcctctctcaactatcagtctcca 66  Q
    ||||||| ||||| |||||||||||||||||||| | ||||||||    
T  10802321 cctctctcaatttgcgcctcttcctctctcaactcttagtctcca 10802277  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 13569895 - 13569851
Alignment:
Q  22 cctctcttaatttacgcctcttcctctctcaactatcagtctcca 66  Q
    ||||||| ||||| |||||||||||||||||||| | ||||||||    
T  13569895 cctctctcaatttgcgcctcttcctctctcaactcttagtctcca 13569851  T

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Target: scaffold0001 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 141647 - 141728
Alignment:
Q  142 ctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatc 223  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  141647 ctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatc 141728  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 43585446 - 43585510
Alignment:
Q  167 tgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 231  Q
    ||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||    
T  43585446 tgaatcaatgagttgattattcaaattccaaaccacaatttagaattgttgattatccctaattt 43585510  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 31986142 - 31986217
Alignment:
Q  156 ttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 231  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||| |||||    
T  31986142 ttgttaatggatgaatcaatgagttgattattcaaatttcaaaccacaatttagaattgttgattatccccaattt 31986217  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 53707490 - 53707547
Alignment:
Q  167 tgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatcc 224  Q
    ||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||    
T  53707490 tgaatcaatgagttgattattcaaatttcaaaccacaatttagaattgttgattatcc 53707547  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 20623804 - 20623856
Alignment:
Q  179 ttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 231  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  20623804 ttgattatttaaatacaaaactgcaatttataattgttgattatccctaattt 20623856  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 43301804 - 43301752
Alignment:
Q  179 ttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 231  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  43301804 ttgattatttaaatacaaaactgcaatttataattgttgattatccctaattt 43301752  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 22541394 - 22541451
Alignment:
Q  171 tcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaa 228  Q
    ||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||    
T  22541394 tcaatgagttgattattcaaattccaaaccacaatttagaattgttgattatccctaa 22541451  T

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