View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5903_high_3 (Length: 439)

Name: NF5903_high_3
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5903_high_3
NF5903_high_3
[»] chr8 (7 HSPs)
chr8 (18-434)||(43445950-43446365)
chr8 (18-104)||(43744081-43744167)
chr8 (172-264)||(35063691-35063781)
chr8 (199-255)||(1098786-1098842)
chr8 (371-434)||(43446454-43446517)
chr8 (367-418)||(43446744-43446795)
chr8 (183-265)||(34422835-34422919)
[»] chr5 (4 HSPs)
chr5 (141-321)||(10161273-10161446)
chr5 (210-262)||(23245201-23245253)
chr5 (141-264)||(26916844-26916965)
chr5 (18-104)||(28219183-28219269)
[»] chr4 (6 HSPs)
chr4 (159-265)||(38380264-38380368)
chr4 (173-290)||(2321803-2321918)
chr4 (186-250)||(9132088-9132150)
chr4 (178-265)||(19655510-19655595)
chr4 (145-264)||(33632793-33632910)
chr4 (210-265)||(12701832-12701887)
[»] chr3 (8 HSPs)
chr3 (159-265)||(16973033-16973137)
chr3 (198-265)||(55048226-55048293)
chr3 (210-264)||(22176299-22176353)
chr3 (212-298)||(49002918-49003004)
chr3 (213-264)||(34145659-34145710)
chr3 (210-265)||(42605710-42605765)
chr3 (210-264)||(22101355-22101409)
chr3 (210-264)||(38076749-38076803)
[»] chr7 (5 HSPs)
chr7 (158-265)||(32651911-32652016)
chr7 (178-262)||(1470865-1470948)
chr7 (18-104)||(3146532-3146618)
chr7 (206-264)||(21708253-21708311)
chr7 (37-86)||(17267220-17267269)
[»] chr1 (7 HSPs)
chr1 (206-265)||(38595459-38595518)
chr1 (142-255)||(5851682-5851794)
chr1 (210-265)||(23926102-23926157)
chr1 (203-265)||(34900132-34900194)
chr1 (172-261)||(43810884-43810970)
chr1 (172-244)||(5609936-5610006)
chr1 (141-221)||(52652804-52652882)
[»] chr2 (1 HSPs)
chr2 (178-265)||(32006501-32006586)
[»] scaffold0031 (1 HSPs)
scaffold0031 (213-329)||(78657-78768)
[»] chr6 (1 HSPs)
chr6 (207-258)||(29252843-29252894)


Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 43445950 - 43446365
Alignment:
Q  18 aatcgttctttgttattttttattgtaatcccattcatactaccagtggatttgtcattagccgaaactattaagaaaccattttcagcggtgtttacat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43445950 aatcgttctttgttattttttattgtaatcccattcatactaccagtggatttgtcattagccgaaactattaagaaaccattttcagcggtgtttacat 43446049  T
Q  118 cacctttctggcatactttttaagaaaatgttaactagcgtcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtag 217  Q
    | |||||||||||||||||||| |||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||     
T  43446050 cccctttctggcatactttttaggaaaatgttaactagtatcccggggcacaagttaagtaaacaaaatatagtataagtgtatcttggaacttgtgtac 43446149  T
Q  218 tcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttcnnnnnnngtttccttaactaatgcctcgggagcgaggcactagttaacaaga 317  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||| |||||||||     |||||||||||||||||    
T  43446150 tcaaaatttaaaaagtgtgaaaaatgatgtttttaatataaatatttctttttttgtttccttaactagtgcctcggg-----ggcactagttaacaaga 43446244  T
Q  318 ccctac-ttttttaatggaacataactt---cggattttaaaaagttatgttgcaggacttgccttcctcgcaactgttttaacatgcgagttcatggaa 413  Q
    |||||| |||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  43446245 ccctactttttttaatggaacataactttcacggattttaaaaagtcatgttgcaggacttgccttcctcgcaactttttcaacatgcgagttcatggaa 43446344  T
Q  414 tatttcgatgtttttaaagag 434  Q
    |||||||||||||||||||||    
T  43446345 tatttcgatgtttttaaagag 43446365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 43744081 - 43744167
Alignment:
Q  18 aatcgttctttgttattttttattgtaatcccattcatactaccagtggatttgtcattagccgaaactattaagaaaccattttca 104  Q
    |||| ||||||||||||  ||||||||||| |||||||||||||| ||||| |||||| ||| |||||  ||||||  |||||||||    
T  43744081 aatctttctttgttattagttattgtaatctcattcatactaccactggatctgtcataagcagaaacagttaagattccattttca 43744167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 35063691 - 35063781
Alignment:
Q  172 ttaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 264  Q
    ||||| |||| |||||||||||||||  | ||| ||| ||||||||||||||||| |||||||| || || |||||||| |||| ||||||||    
T  35063691 ttaaggaaaccaaatatagtataagt--accttggaacttgtgtagtcaaagtttcaaaagtgtaaagaaagatgttttcaatgcaaatattt 35063781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 1098842 - 1098786
Alignment:
Q  199 tatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatg 255  Q
    ||||||||||||| ||||||||||||||||||||||| |||||  ||||||| ||||    
T  1098842 tatcttagaatttatgtagtcaaagtttaaaaagtgtaaaaaaatatgttttcaatg 1098786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 43446454 - 43446517
Alignment:
Q  371 acttgccttcctcgcaactgttttaacatgcgagttcatggaatatttcgatgtttttaaagag 434  Q
    |||| ||||||||||||||    |||||||||||||||||||| ||||| | ||||||||||||    
T  43446454 acttaccttcctcgcaactcccctaacatgcgagttcatggaacatttcaaggtttttaaagag 43446517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 43446744 - 43446795
Alignment:
Q  367 caggacttgccttcctcgcaactgttttaacatgcgagttcatggaatattt 418  Q
    |||| ||| |||||||||||||| | ||||||||||||||||||||| ||||    
T  43446744 caggtcttaccttcctcgcaactatcttaacatgcgagttcatggaacattt 43446795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 34422835 - 34422919
Alignment:
Q  183 aaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagt----gtgaaaaatgatgtttttaatgtaaatatttc 265  Q
    |||||||||||||||||  | | ||| ||||||||||||||||||||||||    |  |||||||||||||| |||| |||||||||    
T  34422835 aaatatagtataagtgt--catggaacttgtgtagtcaaagtttaaaaagtgaaagaaaaaaatgatgttttcaatgcaaatatttc 34422919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 10161446 - 10161273
Alignment:
Q  141 gaaaatgttaactagcgtcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaa 240  Q
    ||||||||||||||||| ||| || ||| | ||||| |||| |||||||||||||||  | ||| ||| ||||||| |||||||||||||||||| ||||    
T  10161446 gaaaatgttaactagcgccccagggcactagttaaggaaaccaaatatagtataagt--accttggaacttgtgtaatcaaagtttaaaaagtgtaaaaa 10161349  T
Q  241 atgatgtttttaatgtaaatatttcnnnnnnngtttccttaactaatgcctcgggagcgaggcactagttaacaagaccct 321  Q
    |||||||||| |||| |||||||||       ||||||||||||| |||| ||     ||||||||||||||||| |||||    
T  10161348 atgatgttttcaatgcaaatatttccttttttgtttccttaactagtgccccg-----gaggcactagttaacaacaccct 10161273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 23245253 - 23245201
Alignment:
Q  210 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatat 262  Q
    |||||||||||||| ||||||||||| || ||||||||||| |||| ||||||    
T  23245253 ttgtgtagtcaaagattaaaaagtgtaaagaatgatgttttcaatgcaaatat 23245201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 26916965 - 26916844
Alignment:
Q  141 gaaaatgttaactagcgtcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaa 240  Q
    ||||||||||||||| |||| |||||||   | ||| |||| ||||||| |||||||  |  ||  || ||||||||| ||| |||||||||||| ||||    
T  26916965 gaaaatgttaactagtgtcctgggacactcgtcaaggaaaccaaatataatataagt--actttgaaacttgtgtagtaaaaatttaaaaagtgtaaaaa 26916868  T
Q  241 atgatgtttttaatgtaaatattt 264  Q
    ||||| |||| |||| ||||||||    
T  26916867 atgattttttcaatgcaaatattt 26916844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 28219183 - 28219269
Alignment:
Q  18 aatcgttctttgttattttttattgtaatcccattcatactaccagtggatttgtcattagccgaaactattaagaaaccattttca 104  Q
    |||| ||||||| ||||  |||||| |||| | |||||| ||||||||||||| |||| ||| ||||| | ||||| ||||||||||    
T  28219183 aatctttctttgctattagttattgcaatctccttcataataccagtggatttttcataagcagaaacaactaagataccattttca 28219269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 38380264 - 38380368
Alignment:
Q  159 cccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaa 258  Q
    |||||||||| | ||||| |||| |||||||||||||||  |  || ||||||||||||||||| | |||||||||| || ||| |||||||||||||||    
T  38380264 cccgggacactagttaaggaaaccaaatatagtataagt--actttggaatttgtgtagtcaaaatataaaaagtgtaaagaataatgtttttaatgtaa 38380361  T
Q  259 atatttc 265  Q
    |||||||    
T  38380362 atatttc 38380368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 2321803 - 2321918
Alignment:
Q  173 taagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttcnnnnnnn 272  Q
    |||| |||| |||||||||||||||  ||||| ||| |||||| || |||||||||||||||| ||| |||||||||| |||| |||||||||           
T  2321803 taagaaaactaaatatagtataagt--atcttggaacttgtgtggtgaaagtttaaaaagtgtaaaagatgatgttttcaatgcaaatatttcttctttt 2321900  T
Q  273 gtttccttaactaatgcc 290  Q
    ||||||||||||||||||    
T  2321901 gtttccttaactaatgcc 2321918  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 9132088 - 9132150
Alignment:
Q  186 tatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttt 250  Q
    ||||||||||||  |||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  9132088 tatagtataagt--atcttgaaatttgtgtagtcaaagtttaaaaagtgtaaaaaatgatgtttt 9132150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 19655595 - 19655510
Alignment:
Q  178 aaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 265  Q
    |||| ||||||| |||||||||  |||  || |||||||||||||||||||||||||| || ||| |||||||||||  |||||||||    
T  19655595 aaaccaaatataatataagtgt--cttgaaacttgtgtagtcaaagtttaaaaagtgtaaagaattatgtttttaatacaaatatttc 19655510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 33632793 - 33632910
Alignment:
Q  145 atgttaactagcgtcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatga 244  Q
    ||||||||||| ||||||||  ||   ||||| |||| |||||||||||||||  | |||  |||||||| |||||||||||||||||||| || |||||    
T  33632793 atgttaactagtgtcccggggaactggttaaggaaaccaaatatagtataagt--accttgaaatttgtgcagtcaaagtttaaaaagtgtaaagaatga 33632890  T
Q  245 tgtttttaatgtaaatattt 264  Q
    | |||| |||  ||||||||    
T  33632891 tattttcaatacaaatattt 33632910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 12701887 - 12701832
Alignment:
Q  210 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 265  Q
    |||| ||||||||||||||||||||| || ||||||||||| |||| |||||||||    
T  12701887 ttgtatagtcaaagtttaaaaagtgtaaagaatgatgttttcaatgcaaatatttc 12701832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 16973137 - 16973033
Alignment:
Q  159 cccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaa 258  Q
    |||||||||| | ||||| |||| |||||||||||||||  ||||| ||| |||||||||||||||||||||||||| || ||| ||||||| |||  ||    
T  16973137 cccgggacactagttaaggaaaccaaatatagtataagt--atcttggaacttgtgtagtcaaagtttaaaaagtgtaaagaattatgttttcaatacaa 16973040  T
Q  259 atatttc 265  Q
    |||||||    
T  16973039 atatttc 16973033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 55048226 - 55048293
Alignment:
Q  198 gtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 265  Q
    ||||||| ||||||||||||||||||||| |||||| | |||| | ||||||| |||| |||||||||    
T  55048226 gtatcttggaatttgtgtagtcaaagttttaaaagtataaaaattaatgttttcaatgcaaatatttc 55048293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 22176299 - 22176353
Alignment:
Q  210 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 264  Q
    |||||||||||||||||||||||| | || ||||||||||| |||| ||||||||    
T  22176299 ttgtgtagtcaaagtttaaaaagtataaataatgatgttttcaatgcaaatattt 22176353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 49002918 - 49003004
Alignment:
Q  212 gtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttcnnnnnnngtttccttaactaatgcctcgggagc 298  Q
    ||||||| ||| |||||||||||| || |||||||||||||||| |||| ||||       ||||||||||||| ||| ||||||||    
T  49002918 gtgtagttaaaatttaaaaagtgtaaataatgatgtttttaatgcaaatgtttctttttatgtttccttaactagtgcttcgggagc 49003004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 34145710 - 34145659
Alignment:
Q  213 tgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 264  Q
    |||| |||||||||||||||||| |||||||||||||| |||  ||||||||    
T  34145710 tgtaatcaaagtttaaaaagtgtaaaaaatgatgttttcaatacaaatattt 34145659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 42605765 - 42605710
Alignment:
Q  210 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 265  Q
    ||||||||| |||||||||||||||| |||||| || ||||| ||| |||||||||    
T  42605765 ttgtgtagttaaagtttaaaaagtgtaaaaaataatattttttatgcaaatatttc 42605710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 22101355 - 22101409
Alignment:
Q  210 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 264  Q
    |||||||||||||||||||||||| | || ||||||| ||| |||| ||||||||    
T  22101355 ttgtgtagtcaaagtttaaaaagtataaagaatgatgctttcaatgcaaatattt 22101409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 38076749 - 38076803
Alignment:
Q  210 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 264  Q
    ||||||||| ||| |||||||||||| |||||||||||||| |||  ||||||||    
T  38076749 ttgtgtagttaaaatttaaaaagtgtaaaaaatgatgttttcaatacaaatattt 38076803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 32652016 - 32651911
Alignment:
Q  158 tcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgta 257  Q
    |||||||||||   ||||| |||| |||||||||||||||||  |||  || |||||||||||||||||||||||| | || ||||||||||| |||| |    
T  32652016 tcccgggacaccggttaaggaaaccaaatatagtataagtgt--cttgaaacttgtgtagtcaaagtttaaaaagtataaataatgatgttttcaatgca 32651919  T
Q  258 aatatttc 265  Q
    ||||||||    
T  32651918 aatatttc 32651911  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 1470865 - 1470948
Alignment:
Q  178 aaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaa-gtgtgaaaaatgatgtttttaatgtaaatat 262  Q
    |||| ||||||||||| |||||  ||||||| ||||||||||||| |||||||| |||| |||||||||||||| |||||||||||    
T  1470865 aaactaaatatagtatgagtgt--cttagaacttgtgtagtcaaaatttaaaaaagtgtaaaaaatgatgttttcaatgtaaatat 1470948  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 3146532 - 3146618
Alignment:
Q  18 aatcgttctttgttattttttattgtaatcccattcatactaccagtggatttgtcattagccgaaactattaagaaaccattttca 104  Q
    |||| |||||||| |||  ||| ||||||| ||||| |||||||||||||||| |||||||| ||||| |||||||  |||||||||    
T  3146532 aatctttctttgtcattagttactgtaatctcattcgtactaccagtggatttttcattagcagaaacaattaagatgccattttca 3146618  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 21708311 - 21708253
Alignment:
Q  206 gaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 264  Q
    |||||||| || ||||||||||| |||||| || ||||||||||| |||||||||||||    
T  21708311 gaatttgtataatcaaagtttaagaagtgtaaagaatgatgttttcaatgtaaatattt 21708253  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 17267220 - 17267269
Alignment:
Q  37 ttattgtaatcccattcatactaccagtggatttgtcattagccgaaact 86  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| ||||||    
T  17267220 ttattgtaatctcattcttactaccagtggatttgtccatagcagaaact 17267269  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 38595459 - 38595518
Alignment:
Q  206 gaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 265  Q
    |||||||| ||||||||||||||||||||| || |||||||||||||||| |||||||||    
T  38595459 gaatttgtatagtcaaagtttaaaaagtgtaaataatgatgtttttaatgcaaatatttc 38595518  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 255
Target Start/End: Original strand, 5851682 - 5851794
Alignment:
Q  142 aaaatgttaactagcgtcccggga-cacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaa 240  Q
    |||||||||||||| ||||| | | ||| ||||||| |||  |||||||||||||||  || |||||| ||||| |||||||||||||||| ||  || |    
T  5851682 aaaatgttaactagtgtccccgtaacactaattaaggaaatcaaatatagtataagt--attttagaacttgtgcagtcaaagtttaaaaaatgaaaaga 5851779  T
Q  241 atgatgtttttaatg 255  Q
    |||||||||| ||||    
T  5851780 atgatgttttcaatg 5851794  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 23926102 - 23926157
Alignment:
Q  210 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 265  Q
    |||||||||||||||||||||||||| || |||||| |||| |||| |||||||||    
T  23926102 ttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaaatatttc 23926157  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 34900194 - 34900132
Alignment:
Q  203 ttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 265  Q
    |||||| |||||||||||||||||||||||| | || ||||||||| | |||| |||||||||    
T  34900194 ttagaacttgtgtagtcaaagtttaaaaagtataaagaatgatgttctcaatgcaaatatttc 34900132  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 43810970 - 43810884
Alignment:
Q  172 ttaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaata 261  Q
    ||||| |||| ||||||||||| |||  |||||| || |||||||||||||||||||||| ||| | ||| |||||||| |||| |||||    
T  43810970 ttaagaaaaccaaatatagtatgagt--atcttaaaacttgtgtagtcaaagtttaaaaaatgt-ataaaagatgttttcaatgcaaata 43810884  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 5610006 - 5609936
Alignment:
Q  172 ttaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatga 244  Q
    ||||| |||| |||||||||||||||| ||  || || ||||||||| |||||||||||||||| || |||||    
T  5610006 ttaagaaaaccaaatatagtataagtgcat--taaaacttgtgtagttaaagtttaaaaagtgtaaagaatga 5609936  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 52652804 - 52652882
Alignment:
Q  141 gaaaatgttaactagcgtcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaa 221  Q
    ||||||||||||||| | |||||| ||| | ||||| |||| |||||||||| ||  ||||||| ||| ||||||||||||    
T  52652804 gaaaatgttaactagtgccccggggcactagttaaggaaaccaaatatagtacaa--gtatcttggaacttgtgtagtcaa 52652882  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 32006586 - 32006501
Alignment:
Q  178 aaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 265  Q
    |||| |||||||||||||||  | |||| || |||||||||||||||||||||||||| || |||||| |||| |||| |||||||||    
T  32006586 aaaccaaatatagtataagt--accttataacttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaaatatttc 32006501  T

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Target: scaffold0031 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 329
Target Start/End: Original strand, 78657 - 78768
Alignment:
Q  213 tgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttcnnnnnnngtttccttaactaatgcctcgggagcgaggcactagttaa 312  Q
    |||||||||||||||||||||||  | |||||||||||||||| |||||||||       ||||||||||||| |||| ||     |||||||||||||     
T  78657 tgtagtcaaagtttaaaaagtgtatagaatgatgtttttaatgcaaatatttccttttttgtttccttaactagtgccccg-----gaggcactagttac 78751  T
Q  313 caagaccctactttttt 329  Q
    |||||| ||| ||||||    
T  78752 caagactctattttttt 78768  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 29252894 - 29252843
Alignment:
Q  207 aatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaa 258  Q
    |||||||||||||||||| | |||||||| |||||||||||| | |||||||    
T  29252894 aatttgtgtagtcaaagtcttaaaagtgtaaaaaatgatgttgtcaatgtaa 29252843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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