View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5903_high_7 (Length: 290)
Name: NF5903_high_7
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 30608425 - 30608697
Alignment:
| Q |
1 |
aaatagtgtgaacgattggtcgttgttcgaagcaatatgtacactatatagcttgagtaccatgtcaaacgagtaatgatcgtttcatcgatatttgagg |
100 |
Q |
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| T |
30608425 |
aaatagtgtga-cgattggtcgttgttcgaagcaatatgtacactatatagcttgagtaccatgtcaaacgagtaatgatcgtttcatcgatatttgagg |
30608523 |
T |
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| Q |
101 |
tttcaaatataatttatgataaacattatgatataatttgaatcagttaattgacctcacttagaatgataaaacttatttttggtattacaaagatctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30608524 |
tttcaaatataatttatgataaacattatgatataatttgattcagttaattgacctcacttagaatgataaaacttatttttggtattacaaaaatctg |
30608623 |
T |
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| Q |
201 |
tagaatgatccacgtgggattgcacacatcttactctaacaaatgtttacttatatatttattatataaaaagt |
274 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30608624 |
tagaatgatccacgtgggattgcacacattttactctaacaaatgtttacttatatatttattatataaaaagt |
30608697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 55579237 - 55579265
Alignment:
| Q |
113 |
tttatgataaacattatgatataatttga |
141 |
Q |
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| T |
55579237 |
tttatgataaacattatgatataatttga |
55579265 |
T |
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