View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5903_high_9 (Length: 275)
Name: NF5903_high_9
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 39113539 - 39113792
Alignment:
| Q |
1 |
agttattgccatattcaacatatcttgaaaatcataatgttttattctgcaatttggtatctggtgggacaaattaagataattatacagtatttcatga |
100 |
Q |
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| T |
39113539 |
agttattgccatattcaacatatcttgaaaatcataatgttttattctgcaatttggtatctggtgggacaaattaagataattatacagtatttcatga |
39113638 |
T |
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| Q |
101 |
ttagcaattttataatctgagttttaactttgttgaatgcagtcggaagcggtttagtgagaaacaagcagaaaattggtgggctgagaatcgcgtaaga |
200 |
Q |
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| T |
39113639 |
ttagcaattttataatctgagttttaactttgttgaatgcagtcggaagcggtttagtgagaaacaagcagaaaattggtgggctgagaatcgcgtaaga |
39113738 |
T |
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| Q |
201 |
gtgtatgaacaatacaatgttcgcatggttgacaagtccagtgttggtgttggg |
254 |
Q |
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| T |
39113739 |
gtatatgaacaatacaatgttcgcatggttgacaagtccagtgttggtgttggg |
39113792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 11292584 - 11292688
Alignment:
| Q |
134 |
tgaatgcagtcggaagcggtttagtgagaaacaagcagaaaattggtgggctgagaatcgcgtaagagtgtatgaacaatacaatgttcgcatggttgac |
233 |
Q |
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| T |
11292584 |
tgaatgcagtcgcaagcggtttagtgaaaaacaagcagaacattggtgggctgagaatcggataagagtatatgaacagtacaatgtgcgtatggttgac |
11292683 |
T |
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| Q |
234 |
aagtc |
238 |
Q |
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| T |
11292684 |
aagtc |
11292688 |
T |
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