View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5903_low_1 (Length: 620)

Name: NF5903_low_1
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5903_low_1
NF5903_low_1
[»] chr7 (12 HSPs)
chr7 (185-604)||(22696646-22697065)
chr7 (279-478)||(13726006-13726205)
chr7 (538-604)||(22684876-22684942)
chr7 (212-348)||(19835105-19835238)
chr7 (291-368)||(48825895-48825972)
chr7 (279-344)||(2898177-2898242)
chr7 (300-351)||(19423676-19423727)
chr7 (297-368)||(24237450-24237521)
chr7 (297-364)||(37179967-37180034)
chr7 (289-351)||(21534164-21534226)
chr7 (293-343)||(46661261-46661311)
chr7 (302-414)||(29453041-29453153)
[»] chr1 (8 HSPs)
chr1 (279-368)||(25711091-25711180)
chr1 (292-350)||(19635602-19635660)
chr1 (292-344)||(50740760-50740812)
chr1 (297-367)||(36496810-36496880)
chr1 (291-350)||(32226436-32226495)
chr1 (291-368)||(25892665-25892742)
chr1 (291-344)||(31460637-31460690)
chr1 (291-343)||(37491228-37491280)
[»] chr6 (3 HSPs)
chr6 (292-368)||(15584963-15585039)
chr6 (292-365)||(31462750-31462823)
chr6 (291-368)||(2252423-2252500)
[»] chr5 (7 HSPs)
chr5 (212-350)||(8117163-8117309)
chr5 (292-351)||(13094318-13094377)
chr5 (298-351)||(13024140-13024193)
chr5 (438-510)||(1374340-1374412)
chr5 (293-344)||(30874926-30874977)
chr5 (292-344)||(28461452-28461504)
chr5 (291-344)||(1374462-1374515)
[»] chr8 (6 HSPs)
chr8 (212-363)||(25029343-25029501)
chr8 (279-343)||(13341350-13341414)
chr8 (279-341)||(27708212-27708274)
chr8 (292-349)||(28852613-28852670)
chr8 (291-350)||(14358496-14358555)
chr8 (291-344)||(22576347-22576400)
[»] chr4 (9 HSPs)
chr4 (279-363)||(3124935-3125019)
chr4 (292-344)||(51850712-51850764)
chr4 (292-351)||(52643125-52643184)
chr4 (294-368)||(11389142-11389216)
chr4 (291-368)||(12049549-12049626)
chr4 (291-368)||(49600085-49600162)
chr4 (291-361)||(54856752-54856822)
chr4 (291-344)||(36557024-36557077)
chr4 (299-344)||(43437819-43437864)
[»] chr3 (5 HSPs)
chr3 (292-344)||(30485151-30485203)
chr3 (291-364)||(3987279-3987352)
chr3 (291-364)||(41653752-41653824)
chr3 (291-364)||(41653897-41653969)
chr3 (292-344)||(31203325-31203377)
[»] scaffold0380 (1 HSPs)
scaffold0380 (292-344)||(10994-11046)
[»] chr2 (5 HSPs)
chr2 (291-364)||(35819004-35819076)
chr2 (299-368)||(45710089-45710158)
chr2 (279-351)||(12733076-12733147)
chr2 (291-351)||(17316378-17316438)
chr2 (291-364)||(7154970-7155043)
[»] scaffold0172 (1 HSPs)
scaffold0172 (292-343)||(31034-31085)


Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 185 - 604
Target Start/End: Original strand, 22696646 - 22697065
Alignment:
Q  185 tatccccatgttgtgttttccagttgaaagatagaagactgtgttccgcgacgtaggtgagaagagataaaaatttgaaaagttttagggtctacaaaat 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  22696646 tatccccatgttgtgttttccagttgaaagatagaagactgtgtttcgcgacgcaggtgagaagagataaaaatttgaaaagtgttagggtctacaaaat 22696745  T
Q  285 tcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgctgcgtacctctctaccg 384  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||    
T  22696746 tcccttcaaaaggttttaaaaatagggtaaatttggaaatttcctactaaaatcaaatagcggctgacgcggccgctatccgctacgtacctctctaccg 22696845  T
Q  385 caatagcagctgaagcggaagctatttgatccggcaccacaactacgaatgccgtagcggtttttcaccgctacgccacgcgcagccgctatagtgctgc 484  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||    
T  22696846 ctatagcagctgaagcggaagctatttgatccggcaccacaactacgaatgctgtagcggtttgtcgccgctacgccacgcgcagccgctatagtgctgc 22696945  T
Q  485 tttcggccgttattgactactctgatttaaagtnnnnnnngaataaaggaaactaattttgctttcttacagttgtccaagttgctatctttgatgcata 584  Q
    ||||||||| ||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22696946 tttcggccgctattgactactatgatttaaagtaaaaaaagaataaaggaaactaattttgctttcttacagttgtccaagttgctatctttgatgcata 22697045  T
Q  585 taactctttgggcatgttta 604  Q
    ||||||||||||||||||||    
T  22697046 taactctttgggcatgttta 22697065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 279 - 478
Target Start/End: Complemental strand, 13726205 - 13726006
Alignment:
Q  279 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgctgcgtacctct 378  Q
    |||||| ||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||||   ||||  |||| |||| ||||| || ||| ||    
T  13726205 caaaatgccctaaaaaaggtttttaaaatagggtcaatttgaaaatttcctactaaaatcaaatagcatctgaagcggctgctaaccgctccgcaccgct 13726106  T
Q  379 ctaccgcaatagcagctgaagcggaagctatttgatccggcaccacaactacgaatgccgtagcggtttttcaccgctacgccacgcgcagccgctatag 478  Q
     |  ||| ||||||||||||||||  |||||||||| | | ||| | || |||| | |||||||||||  || ||||||||| ||| ||| |||||||||    
T  13726105 atgtcgctatagcagctgaagcggccgctatttgattctgtaccgctacgacgattaccgtagcggttcatcgccgctacgctacgtgcacccgctatag 13726006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 538 - 604
Target Start/End: Original strand, 22684876 - 22684942
Alignment:
Q  538 taattttgctttcttacagttgtccaagttgctatctttgatgcatataactctttgggcatgttta 604  Q
    |||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  22684876 taattttgatttcttacagttgtccaaattgctatctgtgatgcatataactctttgggcatgttta 22684942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 212 - 348
Target Start/End: Complemental strand, 19835238 - 19835105
Alignment:
Q  212 aagatagaagactgtgttccgcgacgtaggtgagaagagataaaaatttgaaaagttttagggtctacaaaattcccttcaaaaggttttaaaaataggg 311  Q
    ||||||||||| |||||| |||| |  |||||| |||||| ||||| ||||||| | | ||||| ||| ||||  |||  |||||||||||||||||| |    
T  19835238 aagatagaagagtgtgtttcgcggcacaggtgaaaagagagaaaaagttgaaaaatgtcagggtttacgaaat--cctcaaaaaggttttaaaaatagag 19835141  T
Q  312 tcaatttggaaatttcctactaaaatcaaatagtggc 348  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19835140 tcaatttggaaatttcctac-aaaatcaaatagtggc 19835105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 48825972 - 48825895
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 368  Q
    ||||| ||||||||||||||||||||||| |||||| | ||||||||||||||| ||||||  |||| ||||||||||    
T  48825972 caaaatgttttaaaaatagggtcaatttgaaaattttcaactaaaatcaaatagcggctgaagcggctgctatccgct 48825895  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 2898242 - 2898177
Alignment:
Q  279 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    |||||| ||||  ||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  2898242 caaaatgccctcaaaaaggttttacaaatagggtcaatttagaaatttgctactaaaatcaaatag 2898177  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 19423727 - 19423676
Alignment:
Q  300 ttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 351  Q
    ||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  19423727 ttaaaaatagggtcaatatgaaaatttcctactaaaatcaaatagcggctga 19423676  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 24237450 - 24237521
Alignment:
Q  297 gttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 368  Q
    |||| |||||||  ||||||||| |||||| | ||||||||||||||| ||||||  |||||| ||||||||    
T  24237450 gtttgaaaaataatgtcaatttgaaaattttcaactaaaatcaaataggggctgaagcggccgttatccgct 24237521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 37180034 - 37179967
Alignment:
Q  297 gttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 364  Q
    ||||| ||||||| ||||||||| |||||| | |||||||||||||||  |||||  |||||||||||    
T  37180034 gtttttaaaatagtgtcaatttgaaaattttcaactaaaatcaaatagcagctgaagcggccgctatc 37179967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 21534226 - 21534164
Alignment:
Q  289 ttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 351  Q
    |||||||  ||||||||||| ||||||||||| || || | ||||||||||||||| ||||||    
T  21534226 ttcaaaatattttaaaaatatggtcaatttggtaaatttcaactaaaatcaaatagcggctga 21534164  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 46661261 - 46661311
Alignment:
Q  293 aaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 343  Q
    |||||||||||||||| | |||||||| |||||| ||| ||||||||||||    
T  46661261 aaaggttttaaaaataagatcaatttgaaaattttctattaaaatcaaata 46661311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 414
Target Start/End: Original strand, 29453041 - 29453153
Alignment:
Q  302 aaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgctgcgtacctctctaccgcaatagcagctgaagcg 401  Q
    ||||| ||| |||||||| |||||||||| ||||||||||||| || |||  ||||||| || |||| |  | | || | |||| |||||||||||| ||    
T  29453041 aaaaaaaggatcaatttgaaaatttcctattaaaatcaaatagcggttgaagcggccgccatacgctccacatcgctatgccgctatagcagctgaaacg 29453140  T
Q  402 gaagctatttgat 414  Q
    || ||| ||||||    
T  29453141 gacgctgtttgat 29453153  T

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Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 279 - 368
Target Start/End: Original strand, 25711091 - 25711180
Alignment:
Q  279 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 368  Q
    |||||| ||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||  |||||||||||||||    
T  25711091 caaaataccctaaaaaaggttttaaaaatagggtcaatttcgaaatttcctaataaaatcaaattgtggctgaagcggccgctatccgct 25711180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 19635660 - 19635602
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19635660 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagcggctg 19635602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 50740812 - 50740760
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50740812 aaaaggttttaaaaataggatcaatttggaaatttcctactaaaatcaaatag 50740760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 36496880 - 36496810
Alignment:
Q  297 gttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgc 367  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  ||||||  ||||||||||||||    
T  36496880 gttttaaaaatagggttaatttagaaatttcctactaaaatcaaataccggctgaagcggccgctatccgc 36496810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 32226436 - 32226495
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 350  Q
    ||||| |||| ||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  32226436 caaaatgtttcaaaaatagggtcaatttggaaattttcaactaaaatcaaatagcggctg 32226495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 25892742 - 25892665
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 368  Q
    ||||| ||||||||||||| ||||| ||| | |||| | ||||||||||| ||| || |||  |||||||||||||||    
T  25892742 caaaatgttttaaaaatagtgtcaaattgaatattttcaactaaaatcaattagaggttgaagcggccgctatccgct 25892665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 31460690 - 31460637
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    |||||||||||||||||| | | | ||||||||||| | |||||||||||||||    
T  31460690 caaaaggttttaaaaataagtttagtttggaaattttcaactaaaatcaaatag 31460637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 37491228 - 37491280
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 343  Q
    ||||| |||| |||||||||||||||||| |||| | | ||||||||||||||    
T  37491228 caaaatgtttgaaaaatagggtcaatttgaaaatattcaactaaaatcaaata 37491280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 15584963 - 15585039
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 368  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||  |||||||||||||||    
T  15584963 aaaagtttttaaaaatagggtcaatttgaaaatttcctactaaaatcaaatggcggctgaagcggccgctatccgct 15585039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 31462750 - 31462823
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatcc 365  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||  |||||  ||||||||||||    
T  31462750 aaaaggttttaaaaataggctcaatttagaaatttcctactaaaatcaaacagctgctgaagcggccgctatcc 31462823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 2252423 - 2252500
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 368  Q
    ||||| |||||||||||| ||||||||||||||||| | |||||||||||| ||  |||||  |||||||||||||||    
T  2252423 caaaatgttttaaaaatatggtcaatttggaaattttcaactaaaatcaaacagcagctgaagcggccgctatccgct 2252500  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 212 - 350
Target Start/End: Complemental strand, 8117309 - 8117163
Alignment:
Q  212 aagatagaagactgtgttccgcgacgtaggtgagaagagataaaaatttgaaaagttttagggtctac---------aaaattcccttcaaaaggtttta 302  Q
    ||||||||||| |||||| |||| |  ||||||||||||| ||||| ||||||| | ||||||| |||         ||||| ||||  |||||||||||    
T  8117309 aagatagaagagtgtgtttcgcggcacaggtgagaagagagaaaaagttgaaaaatgttagggtttacgaaatcctcaaaatgccctaaaaaaggtttta 8117210  T
Q  303 aaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 350  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||    
T  8117209 aaaatagggtcaatttggaaatttcctactaaaat-aaatagcggctg 8117163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 13094318 - 13094377
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 351  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  13094318 aaaaggttttaaaaatatggtcaatttggaaatttcctagtaaaatcaaatagtcgctga 13094377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 13024140 - 13024193
Alignment:
Q  298 ttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 351  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  13024140 ttttaaaaatatggtcaatttggaaatttcctagtaaaatcaaatagtcgctga 13024193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 510
Target Start/End: Complemental strand, 1374412 - 1374340
Alignment:
Q  438 gtagcggtttttcaccgctacgccacgcgcagccgctatagtgctgctttcggccgttattgactactctgat 510  Q
    |||||||||| || ||||||||| |||||| ||||||||||||| ||| ||||||| ||||||||||| ||||    
T  1374412 gtagcggtttgtcgccgctacgctacgcgcggccgctatagtgccgctatcggccgctattgactactatgat 1374340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 30874926 - 30874977
Alignment:
Q  293 aaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    |||||||||||||||| ||| |||||  ||||||||||||||||||||||||    
T  30874926 aaaggttttaaaaatatggtgaatttaaaaatttcctactaaaatcaaatag 30874977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 28461452 - 28461504
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    |||| |||||||||| || ||||||||  ||||||||||||||||||||||||    
T  28461452 aaaaagttttaaaaacagagtcaatttaaaaatttcctactaaaatcaaatag 28461504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 1374515 - 1374462
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    ||||| ||||| ||||||| ||||||||| |||||| | |||||||||||||||    
T  1374515 caaaatgtttttaaaatagtgtcaatttgaaaattttcaactaaaatcaaatag 1374462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 212 - 363
Target Start/End: Complemental strand, 25029501 - 25029343
Alignment:
Q  212 aagatagaagactgtgttccgcgacgtaggtgagaagagataaaaatttgaaaagttttagggtctacaaaattc--------ccttcaaaaggttttaa 303  Q
    ||||||||||| |||||| |||| |  ||||||||||||| ||||| ||||||| | ||||||| |||||||| |        || | ||||||||||||    
T  25029501 aagatagaagagtgtgtttcgcggctcaggtgagaagagagaaaaagttgaaaaatgttagggtttacaaaatcctcaaaatgccctaaaaaggttttaa 25029402  T
Q  304 aaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctat 363  Q
    |||||||||||||||||||| ||||| || ||||||||||| ||||||  ||||||||||    
T  25029401 aaatagggtcaatttggaaa-ttccttctgaaatcaaatagcggctgaagcggccgctat 25029343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 13341414 - 13341350
Alignment:
Q  279 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 343  Q
    |||||| ||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13341414 caaaatgccctcaaaaaggttttcaaaatagggtcaatttggaaatttcctactaaaatcaaata 13341350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 27708212 - 27708274
Alignment:
Q  279 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaa 341  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  27708212 caaaatgccctaaaaaaggttttaaaaatagggtcaatttggaaatttcggactaaaatcaaa 27708274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 28852670 - 28852613
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggct 349  Q
    ||||||||||||||||||||| |||||  ||| ||| |||||||||||||||| ||||    
T  28852670 aaaaggttttaaaaatagggtaaatttaaaaaattcttactaaaatcaaatagcggct 28852613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 14358555 - 14358496
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 350  Q
    ||||| ||||||||||||| || |||||| |||||| | ||||||||||||||| |||||    
T  14358555 caaaatgttttaaaaatagtgtaaatttgaaaattttcaactaaaatcaaatagcggctg 14358496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 22576347 - 22576400
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    ||||| ||||||||||||| | ||||||| |||||| | |||||||||||||||    
T  22576347 caaaatgttttaaaaatagtgacaatttgaaaattttcaactaaaatcaaatag 22576400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 3125019 - 3124935
Alignment:
Q  279 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctat 363  Q
    |||||| ||||  ||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||  ||||||||||    
T  3125019 caaaatgccctaaaaaagattttaaaaatagtgtcaatttgaaaatttcctgctaaaatcaaatagtggctgaagcggccgctat 3124935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 51850712 - 51850764
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51850712 aaaaggttttaaaaatatggtcaatttggaaatttcctactaaaatcaaatag 51850764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 52643184 - 52643125
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 351  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  52643184 aaaaggttttaaaaatagggtcaatttggaaatttccttctaaaatcaaacagcggctga 52643125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 11389142 - 11389216
Alignment:
Q  294 aaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 368  Q
    ||||||||||||||| ||||||||| |||| |||||| ||||||||||||| || |||  |||||||||||||||    
T  11389142 aaggttttaaaaatatggtcaatttagaaaattcctattaaaatcaaatagcggttgaagcggccgctatccgct 11389216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 12049626 - 12049549
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 368  Q
    ||||| ||| |||||||| ||||||||||||||||| | ||||||||||||||| | ||||  |||||||||||||||    
T  12049626 caaaatgttctaaaaatatggtcaatttggaaattttcaactaaaatcaaatagcgtctgaagcggccgctatccgct 12049549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 49600162 - 49600085
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 368  Q
    ||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||| || |||  || ||||||||||||    
T  49600162 caaaatgttttaaaaatagtgtcaatttgaaaattttcgactaaaatcaaatagcggttgaagcgtccgctatccgct 49600085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 54856822 - 54856752
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgct 361  Q
    ||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||| || |||  ||||||||    
T  54856822 caaaatgttttaaaaatagtgtcaatttgaaaattttcaactaaaatcaaatagcggttgaagcggccgct 54856752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 36557024 - 36557077
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    ||||| ||||| |||||| ||||||||||||||||| | | |||||||||||||    
T  36557024 caaaatgtttttaaaatatggtcaatttggaaattttcaattaaaatcaaatag 36557077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 43437819 - 43437864
Alignment:
Q  299 tttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    ||||||| |||||| ||||||||  |||||||||||||||||||||    
T  43437819 tttaaaattagggttaatttggagttttcctactaaaatcaaatag 43437864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 30485151 - 30485203
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30485151 aaaaggttttaaaaatatggtcaatttggaaatttcctactaaaatcaaatag 30485203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 3987352 - 3987279
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 364  Q
    ||||| ||||| |||||| ||||||||||||||||| | ||||||||||||||| ||||||  ||||| |||||    
T  3987352 caaaatgtttttaaaatatggtcaatttggaaattttcaactaaaatcaaatagcggctgaagcggccactatc 3987279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 41653824 - 41653752
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 364  Q
    ||||| ||||||||||||  | ||||||| |||||| | ||||||||||||||| ||||||  |||||||||||    
T  41653824 caaaatgttttaaaaataatgccaatttgaaaattttcaactaaaatcaaatag-ggctgaagcggccgctatc 41653752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 41653969 - 41653897
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 364  Q
    ||||| ||||||||||||  ||||||||| |||||| | ||||||||||||||  ||||||  |||||||||||    
T  41653969 caaaatgttttaaaaataatgtcaatttgaaaattttcaactaaaatcaaata-cggctgaagcggccgctatc 41653897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 31203377 - 31203325
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    |||||||||||||||| | ||||||||  |||||||||| |||||||| ||||    
T  31203377 aaaaggttttaaaaattgagtcaatttaaaaatttcctattaaaatcatatag 31203325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 10994 - 11046
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  10994 aaaaggttttaaaaatagggtcaacttggaaatttcctactaaaattaaatag 11046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 35819076 - 35819004
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 364  Q
    ||||||||||||||| |||| | ||||||||||||||| ||||||||||||||| ||||||  |||||||||||    
T  35819076 caaaaggttttaaaa-taggcttaatttggaaatttccaactaaaatcaaatagcggctgaagcggccgctatc 35819004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 45710089 - 45710158
Alignment:
Q  299 tttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 368  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||  ||||||  || | ||||||||||    
T  45710089 tttaaaaatagggtcaatttgaaaatttcctaccaaaatcaaataacggctgaagcgcctgctatccgct 45710158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 12733076 - 12733147
Alignment:
Q  279 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 351  Q
    |||||| ||||  ||||||||||||||||| || |  |||| |||||||||||||||||||||||||||||||    
T  12733076 caaaatgccctcaaaaaggttttaaaaatatggccg-tttgaaaatttcctactaaaatcaaatagtggctga 12733147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 17316378 - 17316438
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 351  Q
    ||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||| ||||||    
T  17316378 caaaatgttttaaaaatagtgtcaatttgaaaattttcaactaaaatcaaatagcggctga 17316438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 7154970 - 7155043
Alignment:
Q  291 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 364  Q
    ||||| ||||||||||||| |||||| || |||||| | ||||||||||||||| ||| ||  |||||||||||    
T  7154970 caaaatgttttaaaaatagtgtcaatatgaaaattttcaactaaaatcaaatagcggccgaagcggccgctatc 7155043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 31034 - 31085
Alignment:
Q  292 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 343  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  31034 aaaatgttttaaaaatacggtcaatttgaaaatttcctactaaaatcaaata 31085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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