View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5903_low_12 (Length: 256)
Name: NF5903_low_12
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 83 - 251
Target Start/End: Complemental strand, 4290363 - 4290195
Alignment:
| Q |
83 |
agttcacactcagtgtcaagcatatgaaataagttatgaagagtcaaagaaggatctgcctccatatccttgttgattactggtccaacagtttcatcaa |
182 |
Q |
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| T |
4290363 |
agttcacactcagtgtcaagcatatgaaataagttgtgaagagtcaaagaaggatatgcctccatattcttgttgattactggtccaacagtttcatcaa |
4290264 |
T |
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| Q |
183 |
cattgactccttccttcatcaaatttctatccacaattgaaacaacctcattatcaaaaactttctctg |
251 |
Q |
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| T |
4290263 |
cattgactccttccttcatcaaatttctatccacaattgaaacaacctcattatcaaaaactttctctg |
4290195 |
T |
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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 4292148 - 4292079
Alignment:
| Q |
19 |
aacctactcctcttcagacatgatggtatgttccttatgacataacaaagcctcccctttagaaagttca |
88 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4292148 |
aacctgctcttcttcagacatgatggtatgttccttatgacataacaaagcctcccctttagaaagttca |
4292079 |
T |
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