View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5903_low_13 (Length: 251)
Name: NF5903_low_13
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 52062663 - 52062911
Alignment:
| Q |
1 |
tttcaggccgacagtttgcctgacaagtagagagaaagcttctctctcattgcgtaggcagtatcgtcaacaaattcgcaggtttgatcttgatagtctg |
100 |
Q |
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| T |
52062663 |
tttcaggccgacagtttgcctgacaagtagagagaaagcttctctctcattgcgtaggcagtatcgtcaacaaattcgcaggtttgatcttgatagtctg |
52062762 |
T |
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| Q |
101 |
agtcgtgcttgaggcacaagggcatatcatccagcacttcatcctccagatggataactatattatgtagtatgcagcaaacaagaataattcttggtaa |
200 |
Q |
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| T |
52062763 |
aatcgtgcttgaggcacaagggcatatcatccagcacttcatcctccagatggataactatattatgtagtatgcagcaaacaagaataattcttggtaa |
52062862 |
T |
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| Q |
201 |
tttgtgcttgttaggcttctgcatcactcctccgatattcttcgacatc |
249 |
Q |
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| T |
52062863 |
tttgtgcttgttaggcttctgcatcactcctccgattatcttccacatc |
52062911 |
T |
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