View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5903_low_15 (Length: 239)
Name: NF5903_low_15
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 52062600 - 52062377
Alignment:
| Q |
1 |
tcttcatgttggtcacaactaactttgatagaaatacataaaaatatttttgttgagttcaatgcatgtagccaatgctggtagaaaagagattagtttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52062600 |
tcttcatgttggtcacaactaactttgatagaaatacataaaaatatttttgttgagttcaatgcatgtagccaatgctggtagaaaagagattagtttg |
52062501 |
T |
|
| Q |
101 |
tgctattattgctattgatgcatttttctttataggcaaatgttagtaagttagtgtttatgttagtttcaaagtttgaattcaatcctcctttttgagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52062500 |
tgctattattgctattgatgcatttttctttataggaaaatgttagtaagtcagtgtttatgttagtttcaaactttgaattcaatcctcctttttgagc |
52062401 |
T |
|
| Q |
201 |
tatctatgtggaatgctattgctg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
52062400 |
tatctatgtggaatgctattgctg |
52062377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 27147525 - 27147484
Alignment:
| Q |
124 |
ttttctttataggcaaatgttagtaagttagtgtttatgtta |
165 |
Q |
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| T |
27147525 |
ttttttttataggcaaatgttagtaagttagtgattatgtta |
27147484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 10768331 - 10768290
Alignment:
| Q |
129 |
tttataggcaaatgttagtaagttagtgtttatgttagtttc |
170 |
Q |
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| T |
10768331 |
tttatacgcaaatgttagtaagttagtggttatgttagtttc |
10768290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 44069948 - 44069912
Alignment:
| Q |
129 |
tttataggcaaatgttagtaagttagtgtttatgtta |
165 |
Q |
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| T |
44069948 |
tttataggcaaatgttagtaagttagtggttatgtta |
44069912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 11877724 - 11877684
Alignment:
| Q |
123 |
tttttctttataggcaaatgttagtaagttagtgtttatgt |
163 |
Q |
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| T |
11877724 |
tttttttttatagacaaatgttagtaagttagtggttatgt |
11877684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 11892731 - 11892691
Alignment:
| Q |
123 |
tttttctttataggcaaatgttagtaagttagtgtttatgt |
163 |
Q |
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||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
11892731 |
tttttttttatagacaaatgttagtaagttagtggttatgt |
11892691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 11895140 - 11895100
Alignment:
| Q |
123 |
tttttctttataggcaaatgttagtaagttagtgtttatgt |
163 |
Q |
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||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
11895140 |
tttttttttatagacaaatgttagtaagttagtggttatgt |
11895100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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