View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5903_low_17 (Length: 233)

Name: NF5903_low_17
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5903_low_17
NF5903_low_17
[»] chr8 (2 HSPs)
chr8 (1-62)||(28435557-28435618)
chr8 (64-97)||(28435374-28435407)
[»] scaffold0220 (1 HSPs)
scaffold0220 (161-218)||(22828-22885)
[»] chr5 (1 HSPs)
chr5 (161-218)||(10487521-10487578)
[»] chr1 (6 HSPs)
chr1 (161-218)||(4644481-4644538)
chr1 (161-218)||(14366239-14366296)
chr1 (161-218)||(21527629-21527686)
chr1 (169-218)||(9528368-9528417)
chr1 (161-218)||(52336131-52336188)
chr1 (162-218)||(48266333-48266389)
[»] chr4 (4 HSPs)
chr4 (161-213)||(3130598-3130650)
chr4 (161-199)||(47540394-47540432)
chr4 (161-218)||(5817796-5817853)
chr4 (161-218)||(8655688-8655745)
[»] scaffold0029 (1 HSPs)
scaffold0029 (161-218)||(135251-135308)
[»] scaffold0002 (2 HSPs)
scaffold0002 (161-218)||(313078-313135)
scaffold0002 (161-218)||(328532-328589)
[»] chr3 (1 HSPs)
chr3 (161-218)||(32004449-32004506)
[»] chr7 (2 HSPs)
chr7 (167-215)||(15654325-15654373)
chr7 (161-213)||(19402686-19402738)
[»] chr6 (1 HSPs)
chr6 (162-218)||(33629568-33629624)


Alignment Details
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28435618 - 28435557
Alignment:
Q  1 tctaactttactatttgaaattatcatttttctgtgggaacaaaattttaagttatgttata 62  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28435618 tctaactttattatttgaaattatcatttttatgtgggaacaaaattttaagttatgttata 28435557  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 28435407 - 28435374
Alignment:
Q  64 tttttgttaaattcaaggaaccagattttgcgaa 97  Q
    ||||||||||||||||||||||||||||||||||    
T  28435407 tttttgttaaattcaaggaaccagattttgcgaa 28435374  T

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Target: scaffold0220 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 22885 - 22828
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| ||||||||||||||||||||||| || ||||||||  |||||||||||||||    
T  22885 aaaaagccaaaatgaaattatataacaatacagtccctagagcacaaggtgtgtcata 22828  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 10487578 - 10487521
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| |||||||||||||||||||||||||| ||||||||  |||||||||| ||||    
T  10487578 aaaaagccaaaatgaaattatataacaatgcagtccctagagcacaaggtgtgccata 10487521  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 4644481 - 4644538
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| |||||| ||||||||||||||||||| ||||||||  |||||||||| ||||    
T  4644481 aaaaagccaaaacgaaattatataacaatgcagtccctagagcacaaggtgtgccata 4644538  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 14366296 - 14366239
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| ||||||| |||||||||||||||||| ||||||||  |||||||||| ||||    
T  14366296 aaaaagccaaaataaaattatataacaatgcaatccctagagcacaaggtgtgccata 14366239  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 21527629 - 21527686
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| ||||||||||||||||||||| |||| ||||||||  |||||||||| ||||    
T  21527629 aaaaagccaaaatgaaattatataacagtgcagtccctagagcacaaggtgtgccata 21527686  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 9528417 - 9528368
Alignment:
Q  169 aaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    |||||||||||||||||||||||| ||||||||  | |||||||| ||||    
T  9528417 aaaatgaaattatataacaatgcagtccctagagcataaggtgtgccata 9528368  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 52336131 - 52336188
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| |||||||||||||||||||||||||| || |||||  |||| ||||| ||||    
T  52336131 aaaaagccaaaatgaaattatataacaatgcagtctctagagcacaatgtgtgccata 52336188  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 48266389 - 48266333
Alignment:
Q  162 aaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    |||| |||||||||||||||||||||||||| | ||||||  |||| ||||| ||||    
T  48266389 aaaagccaaaatgaaattatataacaatgcaattcctagagcacaatgtgtgccata 48266333  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 3130650 - 3130598
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtg 213  Q
    ||||| |||||||||||||||||||||||||| | |||| | |||||||||||    
T  3130650 aaaaagccaaaatgaaattatataacaatgcagttcctaaagtacaaggtgtg 3130598  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 47540394 - 47540432
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattcccta 199  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  47540394 aaaaagccaaaatgaaattatataacaatgcagtcccta 47540432  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 5817853 - 5817796
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| ||||||| |||||||||||||||||| ||||||||  ||| |||||| ||||    
T  5817853 aaaaagccaaaataaaattatataacaatgcagtccctagagcacagggtgtgccata 5817796  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 8655745 - 8655688
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| ||||||||||||||||||||||||||  || ||||  |||||||||| ||||    
T  8655745 aaaaagccaaaatgaaattatataacaatgcagcccgtagagcacaaggtgtgccata 8655688  T

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Target: scaffold0029 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 135308 - 135251
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| ||||||||||||||||||||||||||  |||||||  |||||| ||| ||||    
T  135308 aaaaagccaaaatgaaattatataacaatgcagcccctagagcacaaggcgtgccata 135251  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 313135 - 313078
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| ||||||||||||||||||||||||||  |||||||  |||||| ||| ||||    
T  313135 aaaaagccaaaatgaaattatataacaatgcagcccctagagcacaaggcgtgccata 313078  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 328589 - 328532
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| ||||||||||||||||||||||||||  |||||||  |||||| ||| ||||    
T  328589 aaaaagccaaaatgaaattatataacaatgcagcccctagagcacaaggcgtgccata 328532  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 32004449 - 32004506
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    ||||| ||||||| |||||||||||||||||| ||||||||  |||| ||||| ||||    
T  32004449 aaaaagccaaaataaaattatataacaatgcagtccctagagcacaacgtgtgccata 32004506  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 15654373 - 15654325
Alignment:
Q  167 ccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtc 215  Q
    ||||||||| |||||||||||| ||| ||||||||  ||||||||||||    
T  15654373 ccaaaatgagattatataacaaagcagtccctagagcacaaggtgtgtc 15654325  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 19402686 - 19402738
Alignment:
Q  161 aaaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtg 213  Q
    ||||| ||||||||| |||||||||||| ||| ||||||||  ||||||||||    
T  19402686 aaaaagccaaaatgagattatataacaaagcagtccctagagcacaaggtgtg 19402738  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 33629568 - 33629624
Alignment:
Q  162 aaaaaccaaaatgaaattatataacaatgcattccctagaatacaaggtgtgtcata 218  Q
    |||| |||||||||||||||||||||||| | |||||| |  |||||||||| ||||    
T  33629568 aaaagccaaaatgaaattatataacaatgtagtccctaaagcacaaggtgtgccata 33629624  T

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