View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5903_low_20 (Length: 208)
Name: NF5903_low_20
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 16071396 - 16071227
Alignment:
| Q |
18 |
aaagaatcgaatccataacataacttaccttcaccttcatcataaatctcaaaccatattcataatccaccactgctcggtcagcatatgttcttttcat |
117 |
Q |
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| T |
16071396 |
aaagaatcgaatccataatataacttaccttcaccttcatcataaatctcaaaccatattcataatccaccactggccggtcagcatatgttcttttcat |
16071297 |
T |
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| Q |
118 |
cttctgtgatttcgtgtcaagaaaaaatttagaatattagagaaatgaatgataaaatattcaataaaaa |
187 |
Q |
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| T |
16071296 |
cttctgttattttatgtcaagaaaaaatttagactattagagaaatgaatgataaaatattcaacaaaaa |
16071227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 16068109 - 16067948
Alignment:
| Q |
26 |
gaatccataacataacttaccttcaccttcatcataaatctcaaaccatattcataatccaccactgctcggtcagcatatgttcttttcatcttctgtg |
125 |
Q |
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| T |
16068109 |
gaatccataatataacttaccttcaccttcatcacatatctcgcaacatattcataatccaccactggccggttagcgtatattcttttcatcttctgcg |
16068010 |
T |
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| Q |
126 |
atttcgtgtcaagaaaaaatttagaatattagagaaatgaatgataaaatattcaataaaaa |
187 |
Q |
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| T |
16068009 |
gtttcatgtcaagaaaaattttagactattagagaaatgaatgataaaatattcaacaaaaa |
16067948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 16078308 - 16078200
Alignment:
| Q |
79 |
ataatccaccactgctcggtcagcatatgttcttttcatcttctgtgatttcgtgtcaagaaaaaatttagaatattagagaaatgaatgataaaatatt |
178 |
Q |
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| T |
16078308 |
ataatccaccactggccggtcagcataaattcttttcatcttatgtggtttcatgtcaagaaaaaaattagaccatcagagaaatgaatgatgaaatatt |
16078209 |
T |
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| Q |
179 |
caataaaaa |
187 |
Q |
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||| ||||| |
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| T |
16078208 |
caacaaaaa |
16078200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 3860158 - 3860069
Alignment:
| Q |
97 |
gtcagcatatgttcttttcatcttctgtgatttcgtgtcaagaaaaaatttagaatattagagaaatgaatgataaaatattcaataaaa |
186 |
Q |
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|||||||||| ||||||||||||||||| |||| ||||| |||||||||||| || |||||||| | | | ||||||||||| |||| |
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| T |
3860158 |
gtcagcatatattcttttcatcttctgttttttcaagtcaataaaaaatttagaccatcagagaaatcattaagaaaatattcaacaaaa |
3860069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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