View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5903_low_4 (Length: 430)
Name: NF5903_low_4
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 11296506 - 11296287
Alignment:
| Q |
20 |
gatgcgaattccagtgcttgtgcaagctacttcaatccccaaaaaatacttcaatcttccaggatccttgattttgaaattgttgttgagaaaggccttg |
119 |
Q |
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| T |
11296506 |
gatgcgaattccagtgcttgtgcaagctacttcaatcccaaaaaaatact-caatgttccaagatccttgattttgaaattgtttttgaggaaggccttg |
11296408 |
T |
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| Q |
120 |
atatatgtactttcttgaagattgttacctgcaatgataacatcatcaacataaattaaaatggctacgaaagaattaccgaatttcttagtaaataatg |
219 |
Q |
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| T |
11296407 |
atatatgtactttcttgaagattgttacctgcaataataatatcatcaacataaattaaaatggctacgaaagaattaccaaatttcttagtaaataatg |
11296308 |
T |
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| Q |
220 |
aatgatcaaaagaagattgta |
240 |
Q |
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| T |
11296307 |
aatgatcaaaagaagattgta |
11296287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 354 - 418
Target Start/End: Complemental strand, 11296143 - 11296079
Alignment:
| Q |
354 |
tgttcctttttctacttcatttacatacatctctagtttcctggcaacaaattaacctggatatt |
418 |
Q |
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| T |
11296143 |
tgttcctttttctacttcatttacatacatctctagtttcctggcaacaaattaacctggatatt |
11296079 |
T |
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