View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5903_low_5 (Length: 366)
Name: NF5903_low_5
Description: NF5903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5903_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 39113192 - 39113547
Alignment:
| Q |
11 |
caaaggatagtgaatcccgtagtgagactgaatgggttgagcaagatgaacctggtgtatatattacactcacgtccctaccaggaggtgtaatagatct |
110 |
Q |
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| T |
39113192 |
caaaggatagtgaatcccgtagtgagactgaatgggttgagcaagatgaacctggtgtatatattacactcacgtccctaccaggaggtgtaatagatct |
39113291 |
T |
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| Q |
111 |
taagagagttcgcttcaggtatgtattgctctgcagacattttgctgttaacttgcagaacgtcatctgcaaaatttggtactaaagaataagatatact |
210 |
Q |
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| T |
39113292 |
taagagagttcgcttcaggtatgtattgctctgcagacattttgctgttaacttgcagaacgtcatctgcaaaatttggtactaaagaataagatatact |
39113391 |
T |
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| Q |
211 |
tctaagaaaaaggaaaaatggtagaatatgacattcatgttgccatttttggagcaacatgattcattttcttggctcagttccccactgtttgcctcag |
310 |
Q |
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| T |
39113392 |
tctaagaaaaaggaaaaatggtagaatatgacattcatgttgccatttttggagcaacatgattcattttctttgctcagttccccactgtttgcctcag |
39113491 |
T |
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| Q |
311 |
caaacactaatctgtgggggacagaataatgtcaagaatatacaggtagttattgc |
366 |
Q |
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| T |
39113492 |
caaacactaatctgtgggggacagaataatgtcaagaatatacaggtagttattgc |
39113547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 11292249 - 11292371
Alignment:
| Q |
11 |
caaaggatagtgaatcccgtagtgagactgaatgggttgagcaagatgaacctggtgtatatattacactcacgtccctaccaggaggtgtaatagatct |
110 |
Q |
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||||||||| ||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||||| || || ||||| |||| |||| ||||||||| |
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| T |
11292249 |
caaaggataatgagtcccgtaatgagagcgaatgggttgagcaagatgagcctggtgtatatattactcttacttccctcgcaggcggtgcaatagatct |
11292348 |
T |
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| Q |
111 |
taagagagttcgcttcaggtatg |
133 |
Q |
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| T |
11292349 |
taagagggttcgattcaggtatg |
11292371 |
T |
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