View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5904-Insertion-3 (Length: 305)
Name: NF5904-Insertion-3
Description: NF5904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5904-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 48279006 - 48279311
Alignment:
| Q |
8 |
acaaagttggcgaaataaaaagaaatcaacaataaattattcccatatgaaccaaaattgagtaaaacaattatctcagataaactacctctaccaaaca |
107 |
Q |
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| T |
48279006 |
acaaagttggcgaaataaaaagaaatcaacaataaattattcccatatgaaccaaaattgagtaaaacaattatctcagataaactacctctaccaaaca |
48279105 |
T |
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| Q |
108 |
tgtcaatagtcaacttggttgtttcaacttccatatttcttctcaaagttcttccttcttaaact--------ctcactcactcatcatgaaccaagaat |
199 |
Q |
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| T |
48279106 |
tgtcaatagtcaacttggttgtttcaacttccatatttcttctcaaagttcttccttcttaaactctcactcactcactcactcatcatgaaccaagaat |
48279205 |
T |
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| Q |
200 |
aatcaaatctacacaatggcatcttgcttgaaaccacaaagcagcaatgaagatgattctgtcatactcttttcaacttctaattcttccattagtcctt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48279206 |
aatcaaatctacacaatggcatcttgcttgaaaccacaaagcagcaatgaagatgattctgtcatactcttttcaacttctaattcttccattagtcctt |
48279305 |
T |
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| Q |
300 |
cttcct |
305 |
Q |
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|||||| |
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| T |
48279306 |
cttcct |
48279311 |
T |
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