View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5904-Insertion-5 (Length: 176)
Name: NF5904-Insertion-5
Description: NF5904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5904-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 7e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 7e-91
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 39396705 - 39396537
Alignment:
| Q |
8 |
actatctaacattttggaatgcccaaataaaattatcttgttgttcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatc |
107 |
Q |
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| T |
39396705 |
actatctaacattttggaatgcccaaataaaattatcttgttgttcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatc |
39396606 |
T |
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| Q |
108 |
aacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatg |
176 |
Q |
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| T |
39396605 |
aacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatg |
39396537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 43598202 - 43598128
Alignment:
| Q |
52 |
tcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggt |
126 |
Q |
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| T |
43598202 |
tcatgttccaaataagcaaaagctaccaaaaacgttaacttcatagatgttacgctaacaatttaaagcaatggt |
43598128 |
T |
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