View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5904_low_1 (Length: 998)
Name: NF5904_low_1
Description: NF5904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5904_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 10 - 486
Target Start/End: Original strand, 43016534 - 43017012
Alignment:
| Q |
10 |
aacaatatgaaaattttcaggtatgtattattcatcatccattccaatttagtcttcttaaatattcttcttgtagttgtttctctttaattttctttat |
109 |
Q |
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| T |
43016534 |
aacaaaatgaaaattttcaggtatgtattattcatcatccattccaatttagtcttcttaaatattcttcttgtagttgtttctctttaattttctttat |
43016633 |
T |
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| Q |
110 |
gtaaacaattgagacataattcaaatcgcgattgcatcgctactaaaaaa--ctatagcgtgggnnnnnnnnttagtctatagtatttttatgaatcaca |
207 |
Q |
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| T |
43016634 |
gtaaacaattgagacataattcaagtcgcgattgcatcgctgcgaaaaaaaactatagcg-ggggcaaaaaattagtctatagtatttttatgaatcata |
43016732 |
T |
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| Q |
208 |
ataatttgactcacggttatactttttgaggaagaaatcagtaattttcaattttgtcttggcgnnnnnnn-aataattttcaattagtctttatgtaaa |
306 |
Q |
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| T |
43016733 |
ataatttgactcacggttaaactttttgaggaagaaatcgataattttcaattttgtcttggcgttttttttaataattttcaattagtctttaaataaa |
43016832 |
T |
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| Q |
307 |
caattgaaaattactgatttctttctcaaaaagtttaaccgcgagtcaaattattaaagttttattagtactaaaatatctcaaaaaatgattaatataa |
406 |
Q |
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| T |
43016833 |
caattgaaaattactgatttctttctcaaaaagtttaaccgtgagtcaaattattaaagttttattagtactaaaatatctcaaaaaatgattaatataa |
43016932 |
T |
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| Q |
407 |
gcaacttttttagatttttaaaagagaatgtggtaacacctatttatttatcgtggcaaaataaaagttcagttgatgtc |
486 |
Q |
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| T |
43016933 |
gcaacttttttagatttttaaaagagaatgtggtaacacctatttatttatcgtggcaaaataaaagtttagttgatgtc |
43017012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 699 - 980
Target Start/End: Original strand, 43017130 - 43017420
Alignment:
| Q |
699 |
gaactacttttactccatgatttctttaaattcacaacctgttctttccagtnnnnnnnnnn--------tagtatttgttcggttttgttcatttacaa |
790 |
Q |
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| T |
43017130 |
gaactatttttacttcatgatttctttaaattcacaacctgttctttccagtaaaaaaaaaaaaaaaaaatagtatttgttcggttttgttcatttacaa |
43017229 |
T |
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| Q |
791 |
gacaaaagatcgtgacttttaagaatttactcatccaaatacatgtggaaagtgagaaaagagctctctcaacttagtgcaattaatgggccactcaata |
890 |
Q |
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| T |
43017230 |
gacaaaagatcgtgactttttagaatttactcatccaaatacatgtggaaagtgagaaaagagctctctcaatttagtgcaattaatgggccactcaata |
43017329 |
T |
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| Q |
891 |
tgttgaaccaaaatgggttgattatgcatggtattgtgcacaagct-agctaaattcattgatttatactaggagtaggaaaggttttata |
980 |
Q |
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| T |
43017330 |
tgttgaaccaaaatgggttgattgtgcatggtattatgcacaagctaagctaaattcattgatctatactaggagtgggaaaggttttata |
43017420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 557 - 627
Target Start/End: Original strand, 43017057 - 43017127
Alignment:
| Q |
557 |
tgacattgtggttgtagaatcctcaatatacttgatgtgagacctgaatcgttgtgatagatccttaaaaa |
627 |
Q |
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| T |
43017057 |
tgacattgtggttgtagaatcatcaatatacttgatgtgagacctgaatcgttgtgatagatccttaaaaa |
43017127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 43016887 - 43016834
Alignment:
| Q |
207 |
aataatttgactcacggttatactttttgaggaagaaatcagtaattttcaatt |
260 |
Q |
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| T |
43016887 |
aataatttgactcacggttaaactttttgagaaagaaatcagtaattttcaatt |
43016834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 43016785 - 43016731
Alignment:
| Q |
308 |
aattgaaaattactgatttctttctcaaaaagtttaaccgcgagtcaaattatta |
362 |
Q |
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| T |
43016785 |
aattgaaaattatcgatttcttcctcaaaaagtttaaccgtgagtcaaattatta |
43016731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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