View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5904_low_3 (Length: 276)

Name: NF5904_low_3
Description: NF5904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5904_low_3
NF5904_low_3
[»] chr7 (1 HSPs)
chr7 (1-231)||(2653382-2653609)
[»] chr3 (1 HSPs)
chr3 (70-226)||(5302080-5302236)
[»] chr5 (1 HSPs)
chr5 (45-188)||(26619383-26619527)
[»] scaffold0257 (2 HSPs)
scaffold0257 (45-116)||(6953-7024)
scaffold0257 (45-116)||(9048-9119)
[»] chr2 (1 HSPs)
chr2 (79-203)||(16485810-16485935)
[»] chr1 (1 HSPs)
chr1 (182-226)||(19242383-19242427)
[»] scaffold0015 (1 HSPs)
scaffold0015 (51-107)||(29912-29968)
[»] chr8 (1 HSPs)
chr8 (56-113)||(15760728-15760785)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2653609 - 2653382
Alignment:
Q  1 attgtcatattatgagtgaggagtttcaagataaagtgttaaagcttcttccagcttcttcaaaagatcaaattgcatatttcttcaccaaatctttact 100  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2653609 attgccatattatgagcgaggagtttcaagctaaagtgttaaagcatc---cagcttcttcaaaagatcaaattgcatatttcttcaccaaatctttact 2653513  T
Q  101 tcctcaaccttttcatatctattatctaagttggggatgattgatatctatcaacctctaactttaggggtgatatcacaacatatcatctaaggaagga 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2653512 tcctcaaccttttcatatctattatctaagttagggatgattgatatctatcaacctctaactttatgggtgatatcacaacatatcatctaaggaagga 2653413  T
Q  201 ttacttgtgtagcaagtaatcattagctcaa 231  Q
    |||||||||||||||||||||||||||||||    
T  2653412 ttacttgtgtagcaagtaatcattagctcaa 2653382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 5302236 - 5302080
Alignment:
Q  70 aaattgcatatttcttcaccaaatctttacttcctcaaccttttcata-tctattatctaagttggggatgattgatatctatcaacctctaactttagg 168  Q
    |||||||| ||||  |||||||||| || |||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||  |||| ||||| ||     
T  5302236 aaattgcagatttagtcaccaaatcattgcttcctcagccttttcatactctattatccaagttggggatgattgatatttatcgtcctccaacttgagc 5302137  T
Q  169 ggtgatatcacaacatatcatctaaggaaggattacttgtgtagcaagtaatcattag 226  Q
    || ||| ||||| |||||||  ||| ||||||||||||| ||||||||||||||||||    
T  5302136 gg-gatttcacaccatatcagttaaagaaggattacttgcgtagcaagtaatcattag 5302080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 188
Target Start/End: Complemental strand, 26619527 - 26619383
Alignment:
Q  45 cttcttccagcttcttcaaaagatcaaattgcatatttcttcaccaaatctttacttcctcaaccttttcatatct-attatctaagttggggatgattg 143  Q
    |||||||||| |||||| ||||| |||||||   |||||||||| || ||| | |||||||| |||||||| || | | |||| ||||||| ||||||||    
T  26619527 cttcttccagtttcttccaaagaccaaattgttgatttcttcactaagtctctgcttcctcagccttttcacatttcactatccaagttggagatgattg 26619428  T
Q  144 atatctatcaacctctaactttaggggtgatatcacaacatatca 188  Q
    | ||||||||||||| ||||| ||||| || |||| | |||||||    
T  26619427 acatctatcaacctccaacttgaggggggacatcataccatatca 26619383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 6953 - 7024
Alignment:
Q  45 cttcttccagcttcttcaaaagatcaaattgcatatttcttcaccaaatctttacttcctcaaccttttcat 116  Q
    ||||| |||| |||||||||||||||| | |||||||||||||| ||| || | ||||||||||||||||||    
T  6953 cttctgccagtttcttcaaaagatcaactagcatatttcttcactaaacctctccttcctcaaccttttcat 7024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 9048 - 9119
Alignment:
Q  45 cttcttccagcttcttcaaaagatcaaattgcatatttcttcaccaaatctttacttcctcaaccttttcat 116  Q
    ||||| |||| |||||||||||||||| | ||| |||||||||| ||| || | ||||||||||||||||||    
T  9048 cttctgccagtttcttcaaaagatcaactagcaaatttcttcactaaacctctccttcctcaaccttttcat 9119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 16485810 - 16485935
Alignment:
Q  79 atttcttcaccaaatctttacttcctcaaccttttcata-tctattatctaagttggggatgattgatatctatcaacctctaactttaggggtgatatc 177  Q
    ||||||||||||||||| |||||||||| ||||||||||   ||||||| |||   |  |||||||||||||||||| ||| ||||| ||| | |||||     
T  16485810 atttcttcaccaaatctctacttcctcagccttttcatacattattatccaagcctgcaatgattgatatctatcaatctccaacttgaggagggatatt 16485909  T
Q  178 acaacatatcatctaaggaaggatta 203  Q
    ||| ||| ||| ||||| ||||||||    
T  16485910 acatcatgtcagctaagaaaggatta 16485935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 19242383 - 19242427
Alignment:
Q  182 catatcatctaaggaaggattacttgtgtagcaagtaatcattag 226  Q
    |||||||  ||||||||||||||||||||||||||||||||||||    
T  19242383 catatcagttaaggaaggattacttgtgtagcaagtaatcattag 19242427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 29912 - 29968
Alignment:
Q  51 ccagcttcttcaaaagatcaaattgcatatttcttcaccaaatctttacttcctcaa 107  Q
    |||| ||| |||||||||||||||||| ||||||| |||||| | ||||||||||||    
T  29912 ccagtttcatcaaaagatcaaattgcaaatttctttaccaaagcattacttcctcaa 29968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 15760728 - 15760785
Alignment:
Q  56 ttcttcaaaagatcaaattgcatatttcttcaccaaatctttacttcctcaacctttt 113  Q
    |||||| ||||||||| | ||| |||| ||||| ||||| ||||||||||||||||||    
T  15760728 ttcttctaaagatcaagtggcagattttttcacaaaatccttacttcctcaacctttt 15760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University