View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5904_low_4 (Length: 222)
Name: NF5904_low_4
Description: NF5904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5904_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 5678016 - 5677814
Alignment:
| Q |
14 |
cacagacaatagagattgagatgcaaactcacaaacgccacacagcttcatgtttttcatcgttagaaaaacatatctgcatctctcgtgacttgaaaag |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678016 |
cacagacaatagagattgagatgcaaactcacaaatgccacacagcttcatgtttttcatcgttagaaaaacatatctgcatctctcgtgacttgaaaag |
5677917 |
T |
|
| Q |
114 |
tgtgggacttgatgttttaatcaaagatgttacacttgatnnnnnnnttgaaaagatataacttgtgaaagaccaaatagaacatatggtagctgatgat |
213 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5677916 |
tgtgggacttgatgttttaatcaaagaagttacacttgataaaaaaattgaaaagatataacttgtgaaagaccaaatagaacatatggtagctgatgat |
5677817 |
T |
|
| Q |
214 |
gtc |
216 |
Q |
| |
|
||| |
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|
| T |
5677816 |
gtc |
5677814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 5668521 - 5668320
Alignment:
| Q |
15 |
acagacaatagagattgagatgcaaactcacaaacgccacacagcttcatgtttttcatcgttagaaaaacatatctgcatctctcgtgacttgaaaagt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5668521 |
acagacaatagagattgagatgcaaactcacaaacgccacacagcttcatgtttttcatcgttagaataacatatctgcatctctcgtgacttgaaaagt |
5668422 |
T |
|
| Q |
115 |
gtgggacttgatgttttaatcaaagatgttacacttgatnnnnnnnttgaaaagatataacttgtgaaagaccaaatagaacatatggtagctgatgatg |
214 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5668421 |
gtgggacttgatgttttaatcaaagaagttacacttgataaaataattgaaaagatataacttgtgaaagaccaaatagaacatatggtagctgatgatg |
5668322 |
T |
|
| Q |
215 |
tc |
216 |
Q |
| |
|
|| |
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|
| T |
5668321 |
tc |
5668320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 5743629 - 5743432
Alignment:
| Q |
14 |
cacagacaatagagattgagatgcaaactcacaaacgccacacagcttcatgtttttcatcgttagaaaaacatatctgcatctctcgtgacttgaaaag |
113 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||| | ||||| |||||||||||| | || |||||||||||| |
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| T |
5743629 |
cacagccaatggagattgagatgcaaactcacaaacgccacacaacttcttgtttttcaccaccagaaacacatatctgcatatttcttgacttgaaaag |
5743530 |
T |
|
| Q |
114 |
tgtgggacttgatgttttaatcaaagatgttacacttgatnnnnnnnttgaaaagatataacttgtgaaagaccaaatagaacatatggtagctgatgat |
213 |
Q |
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|||||||||||||||||||||||||| | |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5743529 |
agtgggacttgatgttttaatcaaagaaatcacacttga---aataatagaaaaaatataacttgtgaaagaccaaatagaacatatggtagctgatgat |
5743433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 5780588 - 5780391
Alignment:
| Q |
14 |
cacagacaatagagattgagatgcaaactcacaaacgccacacagcttcatgtttttcatcgttagaaaaacatatctgcatctctcgtgacttgaaaag |
113 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||| | ||||| |||||||||||| | || |||||||||||| |
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| T |
5780588 |
cacagccaatggagattgagatgcaaactcacaaacgccacacaacttcttgtttttcaccaccagaaacacatatctgcatatttcttgacttgaaaag |
5780489 |
T |
|
| Q |
114 |
tgtgggacttgatgttttaatcaaagatgttacacttgatnnnnnnnttgaaaagatataacttgtgaaagaccaaatagaacatatggtagctgatgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5780488 |
agtgggacttgatgttttaatcaaagaaatcacacttga---aataatagaaaaaatataacttgtgaaagaccaaatagaacatatggtagctgatgat |
5780392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 5692242 - 5692106
Alignment:
| Q |
15 |
acagacaatagagattgagatgcaaactcacaaacgccacacagcttcatgtttttcatcgttagaaaaacatatctgcatctctcgtgacttgaaaagt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || || ||||||| |||||| |||||| |||||||||||||||||| |||| |||||||||||| |
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| T |
5692242 |
acagacaatggagattgagatgcaaactcacaaaggcgacgcagcttcttgttttccatcgtcagaaaaacatatctgcatatctcctgacttgaaaagg |
5692143 |
T |
|
| Q |
115 |
gtgggacttgatgttttaatcaaagatgttacacttg |
151 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
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| T |
5692142 |
gtgggacttgatgttttaatcaaagaagttacacttg |
5692106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 5791772 - 5791647
Alignment:
| Q |
15 |
acagacaatagagattgagatgcaaactcacaaacgccacacagcttcatgtttttcatcgttagaaaaacatatctgcatctctcgtgacttgaaaagt |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||||| |||||||||||| |||| ||||||||| ||| |
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| T |
5791772 |
acagacaatggagattgagatgcaaactcacaaacgccacacaatttcttgtttttcaccgtcagaaacacatatctgcatatctcttgacttgaagagt |
5791673 |
T |
|
| Q |
115 |
gtgggacttgatgttttaatcaaaga |
140 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
5791672 |
gtgggacttgatgttttaatcaaaga |
5791647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 5751313 - 5751114
Alignment:
| Q |
15 |
acagacaatagagattgagatgcaaactcacaaacgccacacagcttcatgtttttcatcgttagaaaaacatatctgcatctctcgtgacttgaaaagt |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||| || | |||| ||| | ||| |||||||| ||| ||| ||||| ||||| |
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| T |
5751313 |
acagacaatggagattgagatgcaaactcacaaacgccacacaacttcttgatgttcaccgtcataaacacatatcttcatacctcaggacttcaaaagg |
5751214 |
T |
|
| Q |
115 |
gtgggacttgatgttttaatcaaagatgttacacttgatnnnnnnnttgaaaagatataacttgtgaaagaccaaatagaacatatggtagctgatgatg |
214 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| | | | ||||||||||||||||||| ||||||||||||||| || ||||||||||||| |
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| T |
5751213 |
ttgggacttgatgttttaatcaaagaaatcacactcgttaaactaatagaaaagatataacttgtgacagaccaaatagaacacatagtagctgatgatg |
5751114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 5788272 - 5788073
Alignment:
| Q |
15 |
acagacaatagagattgagatgcaaactcacaaacgccacacagcttcatgtttttcatcgttagaaaaacatatctgcatctctcgtgacttgaaaagt |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||| || | |||| ||| | ||| |||||||| ||| ||| ||||| ||||| |
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|
| T |
5788272 |
acagacaatggagattgagatgcaaactcacaaacgccacacaacttcttgatgttcaccgtcataaacacatatcttcatacctcaggacttcaaaagg |
5788173 |
T |
|
| Q |
115 |
gtgggacttgatgttttaatcaaagatgttacacttgatnnnnnnnttgaaaagatataacttgtgaaagaccaaatagaacatatggtagctgatgatg |
214 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| | | | ||||||||||||||||||| ||||||||||||||| || ||||||||||||| |
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| T |
5788172 |
ttgggacttgatgttttaatcaaagaaatcacactcgttaaactaatagaaaagatataacttgtgacagaccaaatagaacacatagtagctgatgatg |
5788073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 5692110 - 5692070
Alignment:
| Q |
174 |
acttgtgaaagaccaaatagaacatatggtagctgatgatg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5692110 |
acttgtgaaagaccaaatagaacatatggtagctgatgatg |
5692070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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