View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905-Insertion-10 (Length: 294)
Name: NF5905-Insertion-10
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905-Insertion-10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 34976468 - 34976753
Alignment:
| Q |
9 |
aatctcttttctcaaagaggataataggttcagttctgtaccgaatacttcatcagggtccttaggattgtcccatttctctccttcagttattatgttt |
108 |
Q |
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| T |
34976468 |
aatctcttttctcaaagaggataataggttcagttctgtaccgaatacttcatcagggtccttaggattgtcccatttctctccttcagttattatgttt |
34976567 |
T |
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| Q |
109 |
ttcaatattccaccatccttggtaatgtccttgacacttgtccaagacagcaactccacatcaaactgaagagctgcgtttgggggaatagtgggaggag |
208 |
Q |
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| T |
34976568 |
ttcaatattccaccatccttggtaatgtccttgacacttgtccaagacagcaactccacatcaaactgaagagctgcgtttgggggaatagtgggaggag |
34976667 |
T |
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| Q |
209 |
acccagattctccataagccaactctgggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccac |
294 |
Q |
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| T |
34976668 |
acccagattctccataagccaactctgggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccac |
34976753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 293
Target Start/End: Original strand, 3496312 - 3496469
Alignment:
| Q |
136 |
tccttgacacttgtccaagacagcaactccacatcaaactgaagagctgcgtttgggggaatagtgggaggagacccagattctccataagccaactctg |
235 |
Q |
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| T |
3496312 |
tccttcacactagtccaagacagcagctcaacatcaaattgcagagtagcattaggaggaatagttggaggagaaccagattcaccataagctaactcag |
3496411 |
T |
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| Q |
236 |
ggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatccca |
293 |
Q |
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| T |
3496412 |
gtggaatggtgaaaagagcattttcacctttcttcatggttttaattccctcatccca |
3496469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 293
Target Start/End: Original strand, 18848789 - 18849035
Alignment:
| Q |
47 |
taccgaatacttcatcagggtccttaggattgtcccatttctctccttcagttattatgtttttcaatattccaccatccttggtaatgtccttgacact |
146 |
Q |
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| T |
18848789 |
tacccaatacttcatcaggatccttggggttctcccatttctccccctctttaagtatcctcttaaatataccaccatctttacatatgtccttcacact |
18848888 |
T |
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| Q |
147 |
tgtccaagacagcaactccacatcaaactgaagagctgcgtttgggggaatagtgggaggagacccagattctccataagccaactctgggggtattgtg |
246 |
Q |
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| T |
18848889 |
ggtccaagacaacatctcaacatcaaattggagcgtcgcattaggaggaattgtcggaggtgaaccagattcaccataagctagctcgggagggatggtg |
18848988 |
T |
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| Q |
247 |
aaaatggcattttcacccttcttcatggttttgataccttcatccca |
293 |
Q |
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| T |
18848989 |
aagagtgcattttcacctttcttcatggttttaataccttcatccca |
18849035 |
T |
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