View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905-Insertion-2 (Length: 885)
Name: NF5905-Insertion-2
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 786; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 786; E-Value: 0
Query Start/End: Original strand, 9 - 851
Target Start/End: Complemental strand, 43868506 - 43867669
Alignment:
| Q |
9 |
aaaaactgattccaaatcatcaagttcttcatccttaacctttaacatttcatttttggatgcatccatttcattctcttgtttataatcaaacacttgt |
108 |
Q |
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| T |
43868506 |
aaaaactgattccaaatcatcaagttcttcatccttaacctttaacatttcacttttggatgcatccatttcattctcttgtttataatcaaacacttgt |
43868407 |
T |
|
| Q |
109 |
cctgatgaattctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactcacagaaactat |
208 |
Q |
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| T |
43868406 |
cctgatgaattctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactcacagaaactat |
43868307 |
T |
|
| Q |
209 |
ccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcgaaaactggcacacgacacagcaa |
308 |
Q |
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| T |
43868306 |
ccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcgaaaactggcacacgacacagcaa |
43868207 |
T |
|
| Q |
309 |
ctgctcctcatcagcctcgtcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagtattgaag |
408 |
Q |
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| T |
43868206 |
ctgctcctcatcagcctcatcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagtattgaag |
43868107 |
T |
|
| Q |
409 |
agaactttttccttgagacgttgttgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaatccactgtgccatgctt |
508 |
Q |
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| T |
43868106 |
agaactttttccttgagacgttgctgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaatccactgtgccatgctt |
43868007 |
T |
|
| Q |
509 |
gtgctgttgttgttaccttagcagatgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaattgtcacaaccatg |
608 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868006 |
gtgctgttgttgttaccttagcagacgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaattgtcacaaccatg |
43867907 |
T |
|
| Q |
609 |
acaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatct |
708 |
Q |
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| T |
43867906 |
acaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatct |
43867807 |
T |
|
| Q |
709 |
gcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtcnnnnnnnnnnnntgattcaattaatggtttgtgtttgttgaaa |
808 |
Q |
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| T |
43867806 |
gcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtc-----aaaaaaatgattcaattaatggtttgtgtttgttgaaa |
43867712 |
T |
|
| Q |
809 |
ctagacaatgtgatgaaggagacacactagtgtcagtaggtac |
851 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867711 |
ctagacaatgtgatgaaggagacacactagtgtcagtaggtac |
43867669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 650
Target Start/End: Original strand, 50056084 - 50056137
Alignment:
| Q |
597 |
gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctct |
650 |
Q |
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||||||| | ||||| || ||||||||||| ||||||||| ||||||||||||| |
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| T |
50056084 |
gtcacaagcttgacagagaaaagcatcatcagcagcacaataccaacgtgctct |
50056137 |
T |
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