View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905-Insertion-3 (Length: 830)
Name: NF5905-Insertion-3
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 485 - 737
Target Start/End: Complemental strand, 40882788 - 40882536
Alignment:
| Q |
485 |
gtattaaggattttgatgtctgttctactttaccatgactatctgtctcttcttttcttatttcattttgcaaagctaatttgtaattattattttttga |
584 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
40882788 |
gtattaaggaatttgatgtctgttctactctaccatgactatttgtctcttcttttcttatttcattttgcaaggctaatttgtagttattattttttga |
40882689 |
T |
|
| Q |
585 |
tttaaaggatttcaagttcccaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcg |
684 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40882688 |
tttaaaggatttcaagttcacaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcg |
40882589 |
T |
|
| Q |
685 |
aatatagttcagacaaatacacattcgaaacttcaaaaagaactgcctcttat |
737 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |
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| T |
40882588 |
aatatagttcagacaaatacacattcgagacttaaaaaagaaccgcctcttat |
40882536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 40883265 - 40883035
Alignment:
| Q |
8 |
aatctgatcaaaagtaaccacctatccctcacgatgtaagcctctttttcacttcgctttcgttcttctactctgtctgcatagagacagaagttaaaag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40883265 |
aatctgatcaaaagtaaccacctatccctcacgatgtaaacctctttttcacttcgcttttgttcttctactctgtctgcatagagacagaagttaaaag |
40883166 |
T |
|
| Q |
108 |
gtagaatgaagaaggaccgactccgagtagtatgtgtctttgacgacaatgatatttgtcttacacagtgaaagcaagacgctgcgacattgcccatcgt |
207 |
Q |
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| T |
40883165 |
gtagaatgaagaaggaccgattctgagtagtatttgtctttgacgacaatgatatttgtcttacgcggtgaaagcaagacgctgcgacattgcccatcat |
40883066 |
T |
|
| Q |
208 |
ggcagaggaatttatggggcacaaaccttga |
238 |
Q |
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| T |
40883065 |
ggcagaggaatttatggggcacaacccttga |
40883035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 304 - 449
Target Start/End: Complemental strand, 40882969 - 40882824
Alignment:
| Q |
304 |
atttgacggattgtgttttctacttttgtttggatgcatgaaccataattaaatgaagatttagtagaaatttagcatagtcgtattgaaaaagatgtgt |
403 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40882969 |
atttgacagattgtgttttgtacttttgtttggatgcatgaaccataattaaatgaagatttagtagaaatttagcatagtcgtagtgaaaaagatgtgt |
40882870 |
T |
|
| Q |
404 |
tggaagatataaggttagagattatatagttcatcacatggagatt |
449 |
Q |
| |
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||||||||||||||| |||||||| |||||||||| ||| |||||| |
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| T |
40882869 |
tggaagatataaggtcagagattaaatagttcatcgcatagagatt |
40882824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 485 - 737
Target Start/End: Original strand, 8909214 - 8909466
Alignment:
| Q |
485 |
gtattaaggattttgatgtctgttctactttaccatgactatctgtctcttcttttcttatttcattttgcaaagctaatttgtaattattattttttga |
584 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909214 |
gtattaaggattttgatgtctgatctactttaccatgactatttgtctcttctttttctatttcattttgcaaagctaatttgtaattattattttttga |
8909313 |
T |
|
| Q |
585 |
tttaaaggatttcaagttcccaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcg |
684 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8909314 |
tttaaaggatttcaagttcacaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaattcaaagcg |
8909413 |
T |
|
| Q |
685 |
aatatagttcagacaaatacacattcgaaacttcaaaaagaactgcctcttat |
737 |
Q |
| |
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|||||||||||||||||||||||||| | || ||||||||||||||| ||||| |
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| T |
8909414 |
aatatagttcagacaaatacacattcaagacatcaaaaagaactgccacttat |
8909466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 8908739 - 8908967
Alignment:
| Q |
8 |
aatctgatcaaaagtaaccacctatccctcacgatgtaagcctctttttcacttcgctttcgttcttctactctgtctgcatagagacagaagttaaaag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8908739 |
aatctgatcaaaagtaaccacctatccctcacgatgtaaacctctttttcacttcgcttttgttcttctactctgtctgcatagagacagaagttaaaa- |
8908837 |
T |
|
| Q |
108 |
gtagaatgaagaaggaccgactccgagtagtatgtgtctttgacgacaatgatatttgtcttacacagtgaaagcaagacgctgcgacattgcccatcgt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
8908838 |
gtagaatgaagaaggaccgactccgagtagtatttgtctttgacgacaatgatatttgtcttacacggtgaaagcaagacactgtgacattgcccatcgt |
8908937 |
T |
|
| Q |
208 |
ggcagaggaatttatggggcacaaaccttga |
238 |
Q |
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|||||| ||||||||||||||||| |||||| |
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| T |
8908938 |
ggcaga-gaatttatggggcacaacccttga |
8908967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 304 - 449
Target Start/End: Original strand, 8909033 - 8909178
Alignment:
| Q |
304 |
atttgacggattgtgttttctacttttgtttggatgcatgaaccataattaaatgaagatttagtagaaatttagcatagtcgtattgaaaaagatgtgt |
403 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8909033 |
atttgacagattgtgttttgtacttttgtttcgatgctttaaccataattaaatgaagatttagtagaaatttagcatagtcgtagtgaaaaagatgtgt |
8909132 |
T |
|
| Q |
404 |
tggaagatataaggttagagattatatagttcatcacatggagatt |
449 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
8909133 |
tggaagatataaggtcagagattatatagttcatcacatagagatt |
8909178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 8891256 - 8891308
Alignment:
| Q |
8 |
aatctgatcaaaagtaaccacctatccctcacgatgtaagcctctttttcact |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8891256 |
aatctgatcaaaagtaaccacctatccctcacgatgtaaacctctttttcact |
8891308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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