View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905-Insertion-4 (Length: 750)

Name: NF5905-Insertion-4
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905-Insertion-4
NF5905-Insertion-4
[»] chr6 (7 HSPs)
chr6 (19-433)||(8814051-8814488)
chr6 (9-432)||(7078181-7078624)
chr6 (436-750)||(8813614-8813926)
chr6 (436-750)||(7078750-7079061)
chr6 (131-200)||(26360897-26360966)
chr6 (228-283)||(7078719-7078774)
chr6 (228-283)||(8813902-8813957)
[»] chr1 (2 HSPs)
chr1 (78-201)||(21968572-21968695)
chr1 (219-256)||(31847318-31847355)
[»] chr7 (2 HSPs)
chr7 (38-194)||(42319274-42319429)
chr7 (118-171)||(41719494-41719547)
[»] chr3 (3 HSPs)
chr3 (220-284)||(2470828-2470892)
chr3 (217-277)||(25158250-25158311)
chr3 (220-265)||(9194355-9194400)
[»] chr8 (1 HSPs)
chr8 (225-255)||(24191000-24191030)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 8814488 - 8814051
Alignment:
Q  19 tcttagcgaaggctttgtaaccatgatatgttagatgaataagtcaggagcaaatcatgtgcttaagagatgtatttgttagattttgcagtaactatgt 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8814488 tcttagcgaaggctttgtaaccatgatatgttagatgtataagtcaggagcaaatcatgtgcttaagagatgtatttgttagattttgcagtaactctgt 8814389  T
Q  119 actttacccaaatagtgggtagttttctacacatggtgtaattactagcttttatgctatcattgaatgaaatatcctcttttcgacc-----tnnnnnn 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  8814388 actttaccccaatagtgggtagttttctacacatggtgtaattactagcttttatgctatcattgaatgaaatatcctcttttcgaccaaaaaaaaaaat 8814289  T
Q  214 ngaaggaaaattgctcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaa------------------caataaaaccaac 295  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |  ||||||||||    
T  8814288 agaaggaaaattgctcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaatgtgagttaactcacgttcggtaaaaccaac 8814189  T
Q  296 atgaattaactcacgttcgataataatcaacattagttataggggaatttttgtgttaatgttacaagtataatcgaattaaagtgtgattttgctccat 395  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8814188 atgagttaactcacgttcgataataatcaacattagttataggggaatttttgtgttaatgttacaagtataatcgaattaaagtgtggttttgctccat 8814089  T
Q  396 taaaaatcaacattagttgcgggatttaagttcgtggg 433  Q
    ||||||||||||||||  | ||||||||||||||||||    
T  8814088 taaaaatcaacattagcagtgggatttaagttcgtggg 8814051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 9 - 432
Target Start/End: Original strand, 7078181 - 7078624
Alignment:
Q  9 ggatattcattcttagcgaaggctttgtaaccatgatatgttagatgaataagtcaggagcaaatcatgtgcttaagagatgtatttgttagattttgca 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7078181 ggatattcattcttagtgaaggctttgtaaccatgatatgttagatgtataagtcaggagcaaatcatgtgcttaagagatgtatttgttagattttgca 7078280  T
Q  109 gtaactatgtactttacccaaatagtgggtagttttctacacatggtgtaattactagcttttatgctatcattgaatgaaatatcctcttttcgacc-- 206  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||      
T  7078281 gtaactctgtactttaccccaatagtgggtagttttctacacatggtgtaatcactagcttttatgctatcattgaatgaaatatcatcttttcgaccaa 7078380  T
Q  207 tnnnnnnngaaggaaaattgctcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaa------------ca------ataa 288  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||       |||    
T  7078381 aaaaaaaagaaggaaaattgctcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaatgtgagttaactcacgtttggtaa 7078480  T
Q  289 aaccaacatgaattaactcacgttcgataataatcaacattagttataggggaatttttgtgttaatgttacaagtataatcgaattaaagtgtgatttt 388  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7078481 aaccaacatgagttaactcacgttcgataataatcaacattagttataggggaatttttgtgttaatgttacaagtataatcgaattaaagtgtggtttt 7078580  T
Q  389 gctccattaaaaatcaacattagttgcgggatttaagttcgtgg 432  Q
    |||||||||||||||||||||||  | |||||||||||| ||||    
T  7078581 gctccattaaaaatcaacattagcagtgggatttaagtttgtgg 7078624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 436 - 750
Target Start/End: Complemental strand, 8813926 - 8813614
Alignment:
Q  436 atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatctttt-ggacagtctagaatagttcccttccaaatcatcatttttgtggtg 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8813926 atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatctttttggacagtctagaatagttcccttccaaatcatcatttttgtggtg 8813827  T
Q  535 catgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcctattttgactatgctatatagcaacatctcttgggcaaagagta 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||      
T  8813826 catgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcttattttgactatgctatatagcaacatctcttgggcaaagag-- 8813729  T
Q  635 ctatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtagaaactagttcataaattgagggttatatccaccttaga 734  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8813728 -tatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtcgaaactagttcataaattgagggttatatccaccttaga 8813630  T
Q  735 gataggacaaatacaa 750  Q
    ||||||||||||||||    
T  8813629 gataggacaaatacaa 8813614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 436 - 750
Target Start/End: Original strand, 7078750 - 7079061
Alignment:
Q  436 atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatcttttggacagtctagaatagttcccttccaaatcatcatttttgtggtgc 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7078750 atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatcttttggacagtctagaatagttcccttccaaatcatcaattttgtggtgc 7078849  T
Q  536 atgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcctattttgactatgctatatagcaacatctcttgggcaaagagtac 635  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       
T  7078850 atgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcttattttgactatgctatatagcaacatctcttgggcaaagag--- 7078946  T
Q  636 tatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtagaaactagttcataaattgagggttatatccaccttagag 735  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  7078947 tatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtcaaaactagttcataaattgagggttatatccaccttagag 7079046  T
Q  736 ataggacaaatacaa 750  Q
    |||||||||||||||    
T  7079047 ataggacaaatacaa 7079061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 26360897 - 26360966
Alignment:
Q  131 tagtgggtagtttt-ctacacatggtgtaattactagcttttatgctatcattgaatgaaatatcctcttt 200  Q
    |||||||||||||| ||||||||| ||||||  |||||||||| |||||||||||||||||||||| ||||    
T  26360897 tagtgggtagtttttctacacatg-tgtaatctctagcttttaagctatcattgaatgaaatatccacttt 26360966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 7078774 - 7078719
Alignment:
Q  228 tcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaac 283  Q
    ||||||||||||||||||| |||||||| || ||||| | ||||||||||| ||||    
T  7078774 tcttctcccaatcaaaattactcattcccacctaaaccatcaaaaataacttcaac 7078719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 8813902 - 8813957
Alignment:
Q  228 tcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaac 283  Q
    ||||||||||||||||||| |||||||| || ||||| | ||||||||||| ||||    
T  8813902 tcttctcccaatcaaaattactcattcccacctaaaccatcaaaaataacttcaac 8813957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 21968572 - 21968695
Alignment:
Q  78 tgcttaagagatgtatttgttagattttgcagtaactatgtactttacccaaatagtgggtagttttctacacatggtgtaattactagcttttatgcta 177  Q
    |||||||||||||||||||||||||| |||| ||| |||||| |||| || |||||||  ||||||||||||||||||||||| | |||||||||  |||    
T  21968572 tgcttaagagatgtatttgttagattctgcactaattatgtattttatcccaatagtgaatagttttctacacatggtgtaatcattagcttttaaacta 21968671  T
Q  178 tcattgaatgaaatatcctctttt 201  Q
    ||||| ||||||||||||||||||    
T  21968672 tcattaaatgaaatatcctctttt 21968695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 31847318 - 31847355
Alignment:
Q  219 gaaaattgctcttctcccaatcaaaattgctcattcct 256  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  31847318 gaaaattgctcttctccctttcaaaattgctcattcct 31847355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 42319429 - 42319274
Alignment:
Q  38 accatgatatgttagatgaataagtcaggagcaaatcatgtgcttaagagatgtatttgttagattttgcagtaactatgtactttacccaaatagtggg 137  Q
    |||||||| ||||||||| ||||||||||||||| ||   || ||||  |||||||||||| ||||||||||| |   ||||||| |||| ||||||| |    
T  42319429 accatgatttgttagatgcataagtcaggagcaagtctattgtttaat-gatgtatttgttggattttgcagtgatgctgtacttgaccccaatagtgag 42319331  T
Q  138 tagttttctacacatggtgtaattactagcttttatgctatcattgaatgaaatatc 194  Q
     | ||||||| |||  ||||||| ||||||| ||  ||||||| |||||||||||||    
T  42319330 cacttttctatacacagtgtaatcactagctatttagctatcaatgaatgaaatatc 42319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 41719547 - 41719494
Alignment:
Q  118 tactttacccaaatagtgggtagttttctacacatggtgtaattactagctttt 171  Q
    ||||||||||  ||||||||||| |||||| ||||| |||||| ||||||||||    
T  41719547 tactttaccctgatagtgggtaggtttctatacatgatgtaatcactagctttt 41719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 2470892 - 2470828
Alignment:
Q  220 aaaattgctcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaaca 284  Q
    |||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||| | ||||||    
T  2470892 aaaattgctcttctccaaatcaaaattgctcattcccacataagctaccgaaaatacccccaaca 2470828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 25158311 - 25158250
Alignment:
Q  217 aggaaaattgctcttctcccaatcaaaattgctcattccta-cataaactaccaaaaataac 277  Q
    |||||||||| |||||||||||||||| | ||||||||| | || |||||||||||||||||    
T  25158311 aggaaaattgttcttctcccaatcaaattagctcattcccaccagaaactaccaaaaataac 25158250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 9194400 - 9194355
Alignment:
Q  220 aaaattgctcttctcccaatcaaaattgctcattcctacataaact 265  Q
    |||||||||||||||||| ||||||||||||| ||| |||| ||||    
T  9194400 aaaattgctcttctcccattcaaaattgctcactcccacatgaact 9194355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 24191030 - 24191000
Alignment:
Q  225 tgctcttctcccaatcaaaattgctcattcc 255  Q
    |||||||||||||||||||||||||||||||    
T  24191030 tgctcttctcccaatcaaaattgctcattcc 24191000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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