View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905-Insertion-5 (Length: 650)

Name: NF5905-Insertion-5
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905-Insertion-5
NF5905-Insertion-5
[»] chr5 (11 HSPs)
chr5 (295-456)||(23074469-23074630)
chr5 (439-540)||(23074774-23074875)
chr5 (541-650)||(23074905-23075014)
chr5 (227-275)||(23074406-23074453)
chr5 (469-530)||(2413220-2413281)
chr5 (473-522)||(2414381-2414430)
chr5 (586-650)||(4268217-4268281)
chr5 (586-650)||(12660434-12660498)
chr5 (480-537)||(27179135-27179192)
chr5 (586-650)||(15988754-15988818)
chr5 (586-650)||(20205073-20205137)
[»] chr4 (11 HSPs)
chr4 (469-538)||(7982762-7982831)
chr4 (586-650)||(29655671-29655735)
chr4 (469-530)||(28910949-28911010)
chr4 (570-650)||(55735108-55735191)
chr4 (586-650)||(43840311-43840375)
chr4 (586-650)||(49951431-49951495)
chr4 (586-650)||(51259534-51259598)
chr4 (586-650)||(51734977-51735041)
chr4 (469-520)||(2357712-2357763)
chr4 (592-650)||(18442152-18442210)
chr4 (469-530)||(47806528-47806588)
[»] chr7 (7 HSPs)
chr7 (469-530)||(3868187-3868248)
chr7 (469-537)||(36718982-36719049)
chr7 (586-650)||(16732051-16732115)
chr7 (586-650)||(17710185-17710249)
chr7 (469-514)||(36718252-36718297)
chr7 (586-650)||(3601770-3601834)
chr7 (586-650)||(29200960-29201024)
[»] chr1 (12 HSPs)
chr1 (586-650)||(36733814-36733878)
chr1 (469-537)||(14939015-14939083)
chr1 (469-537)||(14944259-14944327)
chr1 (586-650)||(44602870-44602934)
chr1 (469-537)||(50616292-50616360)
chr1 (469-537)||(50624120-50624188)
chr1 (487-537)||(14949050-14949100)
chr1 (469-537)||(18527056-18527124)
chr1 (592-650)||(44527377-44527435)
chr1 (469-530)||(270628-270689)
chr1 (486-530)||(1547703-1547747)
chr1 (474-522)||(42105669-42105717)
[»] chr2 (4 HSPs)
chr2 (469-530)||(35413587-35413648)
chr2 (606-648)||(35158852-35158894)
chr2 (586-650)||(11292068-11292131)
chr2 (594-650)||(12130643-12130699)
[»] chr8 (3 HSPs)
chr8 (469-537)||(16939097-16939165)
chr8 (586-650)||(23854050-23854114)
chr8 (586-650)||(33642769-33642833)
[»] chr6 (1 HSPs)
chr6 (586-650)||(28107257-28107321)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 6e-79; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 295 - 456
Target Start/End: Original strand, 23074469 - 23074630
Alignment:
Q  295 tcatgcaataattatttttaatctcaaaaaatcttttaaatcctaaattatgatttttctagttacacccgaaaaatattcagcttcacacaaatttata 394  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  23074469 tcatgcaataattatttttaatctaaaaaaatcttttaaatcctaaattatgatttttctagttacagcagaaaaatattcagcttcacacaaatttata 23074568  T
Q  395 aaacattgttagaatatgtgaagatttgaatgagagattttaatttatatgaaattgctttt 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23074569 aaacattgttagaatatgtgaagatttgaatgagagattttaatttatatgaaattgctttt 23074630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 439 - 540
Target Start/End: Original strand, 23074774 - 23074875
Alignment:
Q  439 ttatatgaaattgcttttattaagataaatttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaattagagacata 538  Q
    |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23074774 ttatatgaaattgcttttattaagataaatttagaatagactgagaatgtaaaacaattttacattatcaaccaattaaaatcacccaattagacacata 23074873  T
Q  539 at 540  Q
    ||    
T  23074874 at 23074875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 541 - 650
Target Start/End: Original strand, 23074905 - 23075014
Alignment:
Q  541 atcaaataaaatatttttcaataattgcattcgagtccaattcatctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttat 640  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  23074905 atcaaataaaatattttccaataattgccttcgagtccaattcatctctagtgcaagctttatcgtcttcggtccatggtgattcataattctatgttat 23075004  T
Q  641 tgtttctagt 650  Q
    ||||| ||||    
T  23075005 tgtttatagt 23075014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 23074406 - 23074453
Alignment:
Q  227 ctaaacaactcatcattggtgaagcatattaagcataattgcttagtat 275  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  23074406 ctaaacaattcatcattggtga-gcatattaagcataattgcttagtat 23074453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 469 - 530
Target Start/End: Original strand, 2413220 - 2413281
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaatta 530  Q
    |||||||||| ||||||||||||| || |||||||| || | |||||||||||| |||||||    
T  2413220 ttagaatagactgacagtgtaaaataaatttacattgtcgatcaattaaaatcatccaatta 2413281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 473 - 522
Target Start/End: Complemental strand, 2414430 - 2414381
Alignment:
Q  473 aatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatca 522  Q
    |||||| ||||||||||||| || |||||||| |||||||||||||||||    
T  2414430 aatagactgacagtgtaaaataagtttacattgtcaaccaattaaaatca 2414381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 4268217 - 4268281
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||||||| ||| ||||| ||||||  ||||||||| |||||||||||||    
T  4268217 ctctagtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctagt 4268281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 12660434 - 12660498
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||| ||||||| ||| | ||||||| ||||||||| |||||||||||||    
T  12660434 ctctagtgcaagctctatcgtcttcgggccacggtgattcagaattctatgatattgtttctagt 12660498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 537
Target Start/End: Complemental strand, 27179192 - 27179135
Alignment:
Q  480 tgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaattagagacat 537  Q
    ||||| ||||||| ||||||||| ||||||| |||||||||||  |||||||| ||||    
T  27179192 tgacaatgtaaaataattttacactatcaactaattaaaatcattcaattagatacat 27179135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 650
Target Start/End: Complemental strand, 15988818 - 15988754
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| ||||| || |||| ||||| | ||||| ||||||  |||||||||||||||||||||||    
T  15988818 ctctagtgcaatctctatcgtcttcaggccatggtgattcggaattctatgttattgtttctagt 15988754  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 20205073 - 20205137
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||| ||| |||  |||| ||||||| ||||||||| |||||||||||||    
T  20205073 ctctagtgcaagctctatcctctccgggtcatggtgattcaaaattctatgctattgtttctagt 20205137  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 469 - 538
Target Start/End: Complemental strand, 7982831 - 7982762
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaattagagacata 538  Q
    |||||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  7982831 ttagaatagactgacaatgtaaaacaactttacattatcaatcaattaaaatcacccaattagacacata 7982762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 586 - 650
Target Start/End: Complemental strand, 29655735 - 29655671
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  29655735 ctctagtgcaagctctatcatcttcgggccatggtgattcagaattctatgttattgtttctagt 29655671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 28911010 - 28910949
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaatta 530  Q
    |||||||||| |||||||||||||||| |||||| |||||||| |||||||||| |||||||    
T  28911010 ttagaatagactgacagtgtaaaacaaatttacactatcaaccgattaaaatcatccaatta 28910949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 570 - 650
Target Start/End: Original strand, 55735108 - 55735191
Alignment:
Q  570 ttcgagtccaattcatct---ctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||||||| ||||||||   ||| |||||||| |||| ||||||| ||||| ||||||| ||||||||| |||||||||||||    
T  55735108 ttcgagtccgattcatctactctagtgcaagctctatcgtcttcggaccatggtgattcagaattctatgctattgtttctagt 55735191  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 586 - 650
Target Start/End: Complemental strand, 43840375 - 43840311
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    |||||||||||||| |||| ||||||| ||||| ||||||  ||||||||| |||||||||||||    
T  43840375 ctctaatgcaagctctatcgtcttcggaccatggtgattcggaattctatgctattgtttctagt 43840311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 49951431 - 49951495
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| ||||||||||||||||||||| || || ||||||| |||||| || |||||||||||||    
T  49951431 ctctagtgcaagctttatcatcttcgggccgtggtgattcagaattctctgctattgtttctagt 49951495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 650
Target Start/End: Complemental strand, 51259598 - 51259534
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||  |||| ||||||| ||||| ||||||| |||| ||||||||||||||||||    
T  51259598 ctctagtgcaagcgctatcgtcttcgggccatggtgattcagaattttatgttattgtttctagt 51259534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 650
Target Start/End: Complemental strand, 51735041 - 51734977
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||| |||  || ||||| ||||||||||||||||| |||||||||||||    
T  51735041 ctctagtgcaagctctatcgtctctggaccatggtgattcataattctatgatattgtttctagt 51734977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 520
Target Start/End: Original strand, 2357712 - 2357763
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaat 520  Q
    |||||||||| | |||||||||||||| |||| | |||||||||||||||||    
T  2357712 ttagaatagactaacagtgtaaaacaactttagactatcaaccaattaaaat 2357763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 650
Target Start/End: Complemental strand, 18442210 - 18442152
Alignment:
Q  592 tgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    |||||||| |||| |||| || ||||| ||||||| ||||||||| |||||||||||||    
T  18442210 tgcaagctatatcgtctttggcccatggtgattcagaattctatgctattgtttctagt 18442152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 530
Target Start/End: Original strand, 47806528 - 47806588
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaatta 530  Q
    |||||||||| |||||| ||||||||| ||||||   |||||||||||||||||| ||||||    
T  47806528 ttagaatagactgacagcgtaaaacaa-tttacaccgtcaaccaattaaaatcactcaatta 47806588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 469 - 530
Target Start/End: Original strand, 3868187 - 3868248
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaatta 530  Q
    |||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  3868187 ttagaatagactgacagtgtaaaacaattttgcactatcaaccaattaaaatcaccaaatta 3868248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 537
Target Start/End: Complemental strand, 36719049 - 36718982
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaattagagacat 537  Q
    |||||||||| ||||| |||||||||||||||||  |||||||||||||| ||| ||||||||| ||||    
T  36719049 ttagaatagactgaca-tgtaaaacaattttacaccatcaaccaattaaattcatccaattagacacat 36718982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 16732051 - 16732115
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||||||| ||| ||||| ||||||| |||||| || |||||||||||||    
T  16732051 ctctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctagt 16732115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 17710185 - 17710249
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||||||| ||| ||||| ||||||| |||||| || |||||||||||||    
T  17710185 ctctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctagt 17710249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 36718252 - 36718297
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaat 514  Q
    |||||||||| ||||| |||||||||||||||||  ||||||||||    
T  36718252 ttagaatagactgacattgtaaaacaattttacaccatcaaccaat 36718297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 3601770 - 3601834
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| ||||||||||||| |||  || ||||| ||||||| |||| |||| |||||||||||||    
T  3601770 ctctagtgcaagctttatcgtctctggaccatggtgattcagaattttatgctattgtttctagt 3601834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 650
Target Start/End: Complemental strand, 29201024 - 29200960
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||| |||  || ||||| ||||||| ||||||||| |||||||||||||    
T  29201024 ctctagtgcaagctctatcgtctctgggccatggtgattcagaattctatgctattgtttctagt 29200960  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 36733814 - 36733878
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  36733814 ctctagtgcaagctatatcgtctccgggccatgatgattcataattctatgttattgtttctagt 36733878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 14939015 - 14939083
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaattagagacat 537  Q
    ||||||||||  |||| ||||||||||||||||| ||||||| |||||||||||  |||||||| ||||    
T  14939015 ttagaatagatcgacaatgtaaaacaattttacactatcaactaattaaaatcatacaattagacacat 14939083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 14944259 - 14944327
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaattagagacat 537  Q
    ||||||||||  |||| ||||||||||||||||| ||||||| |||||||||||  |||||||| ||||    
T  14944259 ttagaatagatcgacaatgtaaaacaattttacactatcaactaattaaaatcatacaattagacacat 14944327  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 44602870 - 44602934
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||||||| ||| ||||| ||||||| ||||||||| |||||||||||||    
T  44602870 ctctagtgcaagctctatcatctccgggccatggtgattcaaaattctatgctattgtttctagt 44602934  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 537
Target Start/End: Complemental strand, 50616360 - 50616292
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaattagagacat 537  Q
    |||||||| | ||| |||||||||||| |||||| ||||||||||||||||||| | ||||||| ||||    
T  50616360 ttagaataaattgatagtgtaaaacaactttacactatcaaccaattaaaatcatcaaattagacacat 50616292  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 537
Target Start/End: Complemental strand, 50624188 - 50624120
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaattagagacat 537  Q
    |||||||| | ||| |||||||||||| |||||| ||||||||||||||||||| | ||||||| ||||    
T  50624188 ttagaataaattgatagtgtaaaacaactttacactatcaaccaattaaaatcatcaaattagacacat 50624120  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 537
Target Start/End: Original strand, 14949050 - 14949100
Alignment:
Q  487 gtaaaacaattttacattatcaaccaattaaaatcacccaattagagacat 537  Q
    |||||||||||||||||||||||| |||||||||||  |||||||| ||||    
T  14949050 gtaaaacaattttacattatcaactaattaaaatcatacaattagacacat 14949100  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 18527056 - 18527124
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaattagagacat 537  Q
    |||||||||| | ||||||  |||||| |||||| |||||||||||||||||||  |||||||| ||||    
T  18527056 ttagaatagactaacagtgcgaaacaactttacactatcaaccaattaaaatcattcaattagacacat 18527124  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 650
Target Start/End: Original strand, 44527377 - 44527435
Alignment:
Q  592 tgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    |||||||| |||||||| ||| ||||| ||||||  ||||||||| |||||||||||||    
T  44527377 tgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctagt 44527435  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 270689 - 270628
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaatta 530  Q
    |||||||||| | || |||||||| || |||||| |||||| |||||||||||| |||||||    
T  270689 ttagaatagactaacggtgtaaaataagtttacactatcaaacaattaaaatcatccaatta 270628  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 530
Target Start/End: Original strand, 1547703 - 1547747
Alignment:
Q  486 tgtaaaacaattttacattatcaaccaattaaaatcacccaatta 530  Q
    |||||||||| |||||| |||||| ||||||||||||| ||||||    
T  1547703 tgtaaaacaactttacactatcaatcaattaaaatcactcaatta 1547747  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 42105669 - 42105717
Alignment:
Q  474 atagagtgacagtgtaaaacaattttacattatcaaccaattaaaatca 522  Q
    ||||| ||||| |||||||||| |||||| | |||||||||||||||||    
T  42105669 atagactgacaatgtaaaacaagtttacactgtcaaccaattaaaatca 42105717  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 469 - 530
Target Start/End: Original strand, 35413587 - 35413648
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaatta 530  Q
    |||||||||| | |||||||||||||| |||||| ||||||||||||||| ||| |||||||    
T  35413587 ttagaatagactaacagtgtaaaacaactttacactatcaaccaattaaattcatccaatta 35413648  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 648
Target Start/End: Complemental strand, 35158894 - 35158852
Alignment:
Q  606 tcttcggtccatgatgattcataattctatgttattgtttcta 648  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||    
T  35158894 tcttcgggccatgatgattcagaattctatgctattgtttcta 35158852  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 650
Target Start/End: Complemental strand, 11292131 - 11292068
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||| | ||||| ||||||||||||| |||| ||||||||||||| ||||    
T  11292131 ctctagtgcaagctctatcgttttcgg-ccatgatgattcaaaattttatgttattgtttatagt 11292068  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 12130699 - 12130643
Alignment:
Q  594 caagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    |||||| ||||||||||||  |||| ||||||| ||||||||| |||| ||||||||    
T  12130699 caagctctatcatcttcgggacatggtgattcagaattctatgctattatttctagt 12130643  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 537
Target Start/End: Complemental strand, 16939165 - 16939097
Alignment:
Q  469 ttagaatagagtgacagtgtaaaacaattttacattatcaaccaattaaaatcacccaattagagacat 537  Q
    ||||||||||  || ||||||||||||||||||| | ||||||||||||||||||  ||||||| ||||    
T  16939165 ttagaatagatcgatagtgtaaaacaattttacactgtcaaccaattaaaatcactaaattagacacat 16939097  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 23854050 - 23854114
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||| ||| ||| ||||| ||||||| ||||||||| |||||||||||||    
T  23854050 ctctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgctattgtttctagt 23854114  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 650
Target Start/End: Complemental strand, 33642833 - 33642769
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    |||||||||||||| | || ||| ||| ||||| ||||||| ||||| ||| |||||||||||||    
T  33642833 ctctaatgcaagctctgtcgtctccgggccatggtgattcagaattcaatgatattgtttctagt 33642769  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 28107257 - 28107321
Alignment:
Q  586 ctctaatgcaagctttatcatcttcggtccatgatgattcataattctatgttattgtttctagt 650  Q
    ||||| |||||||| |||| ||| ||| ||||| ||||||| |||||||||||||||||||||||    
T  28107257 ctctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgttattgtttctagt 28107321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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