View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905-Insertion-6 (Length: 635)

Name: NF5905-Insertion-6
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905-Insertion-6
NF5905-Insertion-6
[»] chr3 (13 HSPs)
chr3 (26-550)||(25310023-25310552)
chr3 (378-507)||(25281816-25281948)
chr3 (110-208)||(34296517-34296616)
chr3 (129-249)||(36033642-36033762)
chr3 (125-264)||(9662361-9662499)
chr3 (166-228)||(34296529-34296591)
chr3 (44-101)||(54987051-54987108)
chr3 (129-187)||(20001797-20001855)
chr3 (317-359)||(23320387-23320429)
chr3 (129-174)||(9496388-9496433)
chr3 (129-186)||(49657940-49657996)
chr3 (493-549)||(25282429-25282485)
chr3 (129-185)||(25336443-25336499)
[»] chr5 (7 HSPs)
chr5 (125-258)||(24025103-24025236)
chr5 (125-214)||(19825756-19825844)
chr5 (129-186)||(38476629-38476686)
chr5 (186-234)||(28538555-28538603)
chr5 (129-181)||(35302079-35302131)
chr5 (129-194)||(17825649-17825713)
chr5 (135-240)||(36954509-36954616)
[»] chr7 (22 HSPs)
chr7 (130-306)||(47113171-47113346)
chr7 (67-304)||(43516955-43517193)
chr7 (112-303)||(39296571-39296756)
chr7 (125-249)||(22589251-22589374)
chr7 (125-304)||(5776803-5776982)
chr7 (125-226)||(10877152-10877253)
chr7 (125-229)||(23373540-23373643)
chr7 (134-238)||(21801303-21801406)
chr7 (129-190)||(6798070-6798130)
chr7 (128-196)||(47113201-47113269)
chr7 (110-235)||(21809866-21809991)
chr7 (129-186)||(15681685-15681742)
chr7 (129-186)||(24464663-24464720)
chr7 (128-223)||(15867555-15867650)
chr7 (63-102)||(42271352-42271391)
chr7 (64-102)||(3562678-3562716)
chr7 (129-195)||(4193638-4193703)
chr7 (129-186)||(4571503-4571560)
chr7 (129-186)||(25002795-25002851)
chr7 (129-186)||(26126342-26126398)
chr7 (129-194)||(43251352-43251417)
chr7 (131-183)||(3403214-3403266)
[»] chr1 (12 HSPs)
chr1 (125-308)||(6285246-6285429)
chr1 (125-307)||(28552387-28552570)
chr1 (124-234)||(14366386-14366496)
chr1 (129-208)||(39386494-39386573)
chr1 (125-203)||(34500404-34500482)
chr1 (127-240)||(36486333-36486446)
chr1 (129-186)||(21148066-21148123)
chr1 (129-186)||(16551803-16551860)
chr1 (129-186)||(22786118-22786174)
chr1 (122-186)||(29182160-29182223)
chr1 (124-204)||(10341143-10341223)
chr1 (49-102)||(28552308-28552363)
[»] chr2 (14 HSPs)
chr2 (146-308)||(2123447-2123609)
chr2 (136-308)||(36199507-36199678)
chr2 (43-214)||(32677992-32678166)
chr2 (125-214)||(13645965-13646054)
chr2 (167-234)||(33199546-33199613)
chr2 (129-183)||(331800-331854)
chr2 (129-196)||(2190620-2190687)
chr2 (63-102)||(6763963-6764002)
chr2 (63-102)||(15735083-15735122)
chr2 (135-196)||(2123468-2123529)
chr2 (166-239)||(2190625-2190698)
chr2 (135-196)||(33199546-33199607)
chr2 (166-214)||(331805-331853)
chr2 (326-358)||(26829111-26829143)
[»] chr4 (18 HSPs)
chr4 (125-234)||(16291825-16291934)
chr4 (167-308)||(14857424-14857565)
chr4 (126-308)||(53097271-53097453)
chr4 (136-239)||(55264967-55265069)
chr4 (124-202)||(5932229-5932306)
chr4 (154-228)||(16291863-16291937)
chr4 (125-227)||(16588539-16588641)
chr4 (125-240)||(12101264-12101379)
chr4 (133-186)||(4098748-4098801)
chr4 (131-196)||(9397281-9397346)
chr4 (129-186)||(51291329-51291386)
chr4 (168-204)||(43336145-43336181)
chr4 (129-184)||(24626382-24626437)
chr4 (271-308)||(1521598-1521635)
chr4 (124-197)||(13764290-13764363)
chr4 (168-228)||(16588570-16588630)
chr4 (168-228)||(16964656-16964716)
chr4 (128-196)||(43336090-43336157)
[»] chr8 (6 HSPs)
chr8 (131-228)||(2053234-2053331)
chr8 (125-203)||(39910213-39910291)
chr8 (168-239)||(13190789-13190860)
chr8 (169-214)||(22845721-22845766)
chr8 (122-194)||(15869490-15869560)
chr8 (45-102)||(38630054-38630113)
[»] chr6 (8 HSPs)
chr6 (125-314)||(29365342-29365531)
chr6 (125-229)||(34192228-34192332)
chr6 (168-238)||(9620513-9620583)
chr6 (125-283)||(11661015-11661173)
chr6 (168-214)||(12193542-12193588)
chr6 (129-186)||(4013826-4013883)
chr6 (45-93)||(15298739-15298789)
chr6 (154-234)||(34192255-34192335)
[»] scaffold0019 (1 HSPs)
scaffold0019 (112-208)||(35849-35946)
[»] scaffold0002 (1 HSPs)
scaffold0002 (129-186)||(455018-455075)


Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 26 - 550
Target Start/End: Original strand, 25310023 - 25310552
Alignment:
Q  26 taggaaatcaatagaataaaggttaaagtgcatttttccctctaagtttcaaaatgttacgattttggtctcctattnnnnnnntgaaaattctgtcct- 124  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||       | |||||| || |||     
T  25310023 taggaaatcaatagaataaaggttaaagtgcattttttcctctaagtttcaaaatgttacaattttggtctcctattaaaaaaataaaaattttgccctc 25310122  T
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||    
T  25310123 tatctttagggaaatatgctcttttgacactctaatttcatggaaatatgatttttttgacctctatctttagggaaataagctattttggccatttatc 25310222  T
Q  225 tttacgaaaaattgcagctttggcctcctattttaggacatttagtgtcttctcagcagctttataacgttttgtaaaattaagagataacttttttcat 324  Q
    ||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  25310223 tttacaaaaaattgcagttttggcctcctattttaggacatgtggtgtcttctcaacagctttataatgttttgtaaaattaagagataaattttttcat 25310322  T
Q  325 agggga-caaaatcgcatctttttgaaacttaagggtgaaaatacactttcgcctagaataaaaaatgtggaaatagaacaccttaaatgaagagatttc 423  Q
    |||||| |||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25310323 aggggaccaaaatcgcaactttttaaaacttaaaggtgaaaatacactttcgcctagaataaaaaatgtggaaatagaacaccttaaatgaagaaatttc 25310422  T
Q  424 tggatacaatgctcttttgttg---cctttcttggttggttcatcatgcttatcatcctcattaaaattacccaagtgctccttatcgctaatcattgac 520  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  25310423 tggatacaatgctcttttgttgcatcctttcttggttggttcatcatgcttatcatcctcattaaaatcacccaagtgctccttatcactaattattgac 25310522  T
Q  521 ttgcctttttctgcattattgttggttgag 550  Q
    |||||||||||||||||||| |||||||||    
T  25310523 ttgcctttttctgcattatttttggttgag 25310552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 378 - 507
Target Start/End: Original strand, 25281816 - 25281948
Alignment:
Q  378 tagaataaaaaatgtggaaatagaacaccttaaatgaagagatttctggatacaatgctcttttgttg---cctttcttggttggttcatcatgcttatc 474  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||   |||||||||||||| ||||||||||||||    
T  25281816 tagaataaaaaatatggaaatagaacaccttaaatgaagagatttcttgatacaatgttcttttgttgcatcctttcttggttgggtcatcatgcttatc 25281915  T
Q  475 atcctcattaaaattacccaagtgctccttatc 507  Q
     || |||||||||| ||||||||||||||||||    
T  25281916 gtcttcattaaaatcacccaagtgctccttatc 25281948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 34296616 - 34296517
Alignment:
Q  110 tgaaaattctgtcctt-atctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagct 208  Q
    |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||    
T  34296616 tgaaaattttgtcctttatctttagggaaatatgctcttttgaccctctaactttatggaaatatgctcttttgaccctttatctttagggaaataagct 34296517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 36033642 - 36033762
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatcttta 228  Q
    ||||| |||||||| ||||||||| ||||||||| ||||||||||| |||| | |||||||||||||| ||||||||||| ||||| |||| ||| ||||    
T  36033642 tttagagaaatatgttcttttgaccctctaactttatggaaatatgctcttctaaccctctatctttaaggaaataagctcttttgaccatctatattta 36033741  T
Q  229 cgaaaaattgcagctttggcc 249  Q
    | |||| |||||  |||||||    
T  36033742 caaaaagttgcaattttggcc 36033762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 125 - 264
Target Start/End: Complemental strand, 9662499 - 9662361
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||||||| |||| |||| |||| || ||||||||| |||||||||||||| ||| |||||||||  |||||||||||| || ||||| ||  |||||    
T  9662499 tatctttaggtaaat-tgcttttttaaccctctaactttatggaaatatgatcgtttaaccctctataattagggaaataatctcttttgaccccttatc 9662401  T
Q  225 tttacgaaaaattgcagctttggcctcctattttaggaca 264  Q
    ||||| |||| ||||| | |||||||||| ||||||||||    
T  9662400 tttacaaaaagttgcaacattggcctcctgttttaggaca 9662361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 34296591 - 34296529
Alignment:
Q  166 ggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatcttta 228  Q
    ||||||||| ||||||||||||||| ||||| ||||||| ||| ||||| || ||||||||||    
T  34296591 ggaaatatgctcttttgaccctctaactttatggaaatatgctcttttgaccctttatcttta 34296529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 54987108 - 54987051
Alignment:
Q  44 aaggttaaagtgcatttttccctctaagtttcaaaatgttacgattttggtctcctat 101  Q
    |||||||||||||| ||||||| ||||||||||||| ||| ||||||| ||| |||||    
T  54987108 aaggttaaagtgcacttttccccctaagtttcaaaaagttgcgattttagtcccctat 54987051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 20001797 - 20001855
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccct 187  Q
    |||||||||||||||||||||||| | ||||| | | ||||||||||||| ||| ||||    
T  20001797 tttagggaaatatgctcttttgaccccctaacataagggaaatatgatctcttgcccct 20001855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 23320429 - 23320387
Alignment:
Q  317 tttttcataggggacaaaatcgcatctttttgaaacttaaggg 359  Q
    ||||||||||||| |||||||||| |||||| |||||||||||    
T  23320429 tttttcataggggtcaaaatcgcaactttttaaaacttaaggg 23320387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 9496433 - 9496388
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatg 174  Q
    |||||||||||||||||||||||| ||||||| | | |||||||||    
T  9496433 tttagggaaatatgctcttttgaccctctaacataaaggaaatatg 9496388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 49657996 - 49657940
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||||||||||||||||| | ||||| | | | |||||||||||||||||||    
T  49657996 tttagggaaatatgctcttttgac-ccctaacataaggaaaatatgatcttttgaccc 49657940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 549
Target Start/End: Complemental strand, 25282485 - 25282429
Alignment:
Q  493 caagtgctccttatcgctaatcattgacttgcctttttctgcattattgttggttga 549  Q
    ||||| || |||||| ||||| |||||||||||||||||| ||||| | ||||||||    
T  25282485 caagtacttcttatcactaattattgacttgcctttttcttcattagttttggttga 25282429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 25336443 - 25336499
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgacc 185  Q
    ||||||||| |||||||||||||| | ||||| | | |||||||||| |||||||||    
T  25336443 tttagggaattatgctcttttgaccccctaacataagggaaatatgaccttttgacc 25336499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 24025103 - 24025236
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||||||||||||||||||||||||| ||||||||| | ||||||||| |||||| || |||||||||||| |||||||||| ||||| || ||||||    
T  24025103 tatctttagggaaatatgctcttttgaccctctaactttacggaaatatgctcttttaacactctatctttagagaaataagctcttttgaccctttatc 24025202  T
Q  225 tttacgaaaaattgcagctttggcctcctatttt 258  Q
    ||||| |||| |||||  ||||||||||| ||||    
T  24025203 tttacaaaaagttgcaattttggcctcctgtttt 24025236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 19825844 - 19825756
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttg 214  Q
    ||||| |||| |||||||||||||| || |||||| || | ||||||||  ||||||||||||||||| |||| |||||||| |||||||    
T  19825844 tatctataggaaaatatgctcttttaac-ctctaattttagggaaatatactcttttgaccctctatcattagagaaataagatattttg 19825756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 38476686 - 38476629
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||||||||||||||||| |  |||| | | |||||||||||||||||||||    
T  38476686 tttagggaaatatgctcttttgaccccataacataagggaaatatgatcttttgaccc 38476629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 28538603 - 28538555
Alignment:
Q  186 ctctatctttagggaaataagctattttggccatttatctttacgaaaa 234  Q
    |||||||||||||||||||||  || |||||| ||||||||||||||||    
T  28538603 ctctatctttagggaaataagacatgttggccctttatctttacgaaaa 28538555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 35302131 - 35302079
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatctttt 181  Q
    |||||||||||||||||||||||| | ||||| | ||| ||||||||||||||    
T  35302131 tttagggaaatatgctcttttgaccccctaacataatgtaaatatgatctttt 35302079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 17825713 - 17825649
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctt 194  Q
    |||||||||||||||||||||||| | ||||| | |  |||||||| |||||||||||| ||||||    
T  17825713 tttagggaaatatgctcttttgac-ccctaacataagagaaatatgttcttttgaccctttatctt 17825649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 36954616 - 36954509
Alignment:
Q  135 gaaatatgctcttttgacactctaacttcat--ggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaa 232  Q
    ||||||||||||||||||  |||||||| ||  |  |||||| |||||| ||||| |||||||| ||||||| |||  |||  || ||||||||||| ||    
T  36954616 gaaatatgctcttttgaccatctaactttatacgagaatatgttcttttaaccctatatctttaaggaaatatgctcattttaccctttatctttacaaa 36954517  T
Q  233 aaattgca 240  Q
    || |||||    
T  36954516 aagttgca 36954509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 130 - 306
Target Start/End: Original strand, 47113171 - 47113346
Alignment:
Q  130 ttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttac 229  Q
    |||| |||||||||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||||||||||||||| | |||||||| ||||||||||     
T  47113171 ttagagaaatatgctcttttgaccctctaactttagggaaatatgctcttttggccctctatctttagggaaataagatcttttggccctttatctttat 47113270  T
Q  230 gaaaaattgcagctttggcctcctattttaggacatttagtgtcttctcagcagctttataacgttttgtaaaatta 306  Q
     |||| ||||   ||||||| ||| |||| |||||  | | ||||| | ||||||||| ||||||||||||||||||    
T  47113271 aaaaagttgcgattttggcc-cctgttttgggacacgtggcgtctttttagcagctttgtaacgttttgtaaaatta 47113346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 67 - 304
Target Start/End: Complemental strand, 43517193 - 43516955
Alignment:
Q  67 ctaagtttcaaaatgttacgattttggtctcctattnnnnnnntgaaaattctgtcct-tatctttagggaaatatgctcttttgacactctaacttcat 165  Q
    |||||||| |||||||| ||||||||| ||||||||       |||||  | || ||| ||| |||||||||||| ||||||||||| ||||||||||||    
T  43517193 ctaagttttaaaatgttgcgattttggcctcctattaaaaaaatgaaatctttgccctctatttttagggaaatacgctcttttgactctctaacttcat 43517094  T
Q  166 ggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaaaattgcagctttggcctcctattttaggacat 265  Q
    | ||||||| |||||| |||||||||||||||| |||||| || || || || ||||||||||| |||| || ||  |||| |  ||| ||||  ||||     
T  43517093 gaaaatatgctcttttaaccctctatctttaggaaaataaactcttctgaccctttatctttacaaaaagtttcaattttgacaccctgttttgagacac 43516994  T
Q  266 ttagtgtcttctcagcagctttataacgttttgtaaaat 304  Q
     | | ||||||||||||||||| ||||||||||||||||    
T  43516993 gtggcgtcttctcagcagctttgtaacgttttgtaaaat 43516955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 112 - 303
Target Start/End: Original strand, 39296571 - 39296756
Alignment:
Q  112 aaaattctgtcct-tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctat 210  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||  |||||| | ||| |||||||||  |||||||||      
T  39296571 aaaattttgtcctctatctttagggaaatatgctcttttgaccctctaactttatggaaatatactcttttaatcctttatctttagataaataagct-- 39296668  T
Q  211 tttggccatttatctttacgaaaaattgcagctttggcctcctattttaggacatttagtgtcttctcagcagctttataacgttttgtaaaa 303  Q
         || |||||| |||| |||| |||||  |||| || |||||||| || ||  | | ||||||||||||||||| |||| ||||||||||    
T  39296669 -----ccctttatcattacaaaaagttgcaattttgaccccctattttggggcacgtggcgtcttctcagcagctttgtaacattttgtaaaa 39296756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 22589251 - 22589374
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||||| ||||||||||||||||||| ||||||||| ||  ||||||| |||||||  |||||||||| ||| ||||||||| ||||| |  ||||||    
T  22589251 tatctttaaggaaatatgctcttttgaccctctaactttata-aaatatgctcttttgttcctctatcttcaggaaaataagctcttttgactctttatc 22589349  T
Q  225 tttacgaaaaattgcagctttggcc 249  Q
    ||||| ||||||||||  |||||||    
T  22589350 tttacaaaaaattgcaattttggcc 22589374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 125 - 304
Target Start/End: Original strand, 5776803 - 5776982
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||| | ||||||||||||||||||| |||||| || |  |||||||| ||||||  ||||||||||| ||||||||||||| ||||||||||| |||    
T  5776803 tatcttaaaggaaatatgctcttttgactctctaattttagagaaatatgctcttttagccctctatcttgagggaaataagctcttttggccattcatc 5776902  T
Q  225 tttacgaaaaattgcagctttggcctcctattttaggacatttagtgtcttctcagcagctttataacgttttgtaaaat 304  Q
    ||| | |||| ||||   ||||||| | | |||| | ||||     ||||||||| |||||||  |||||||||||||||    
T  5776903 tttgcaaaaagttgcgattttggccccatgttttggaacatgcgacgtcttctcaacagctttgcaacgttttgtaaaat 5776982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 10877253 - 10877152
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||||| ||||||||||| ||||||| || |||||  | ||||||||| |||||||| |||||| |||||| |||||||| |||||||||| ||||||    
T  10877253 tatctttatggaaatatgcttttttgaccctttaactctagggaaatatgctcttttgatcctctacctttagagaaataagatattttggccctttatc 10877154  T
Q  225 tt 226  Q
    ||    
T  10877153 tt 10877152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 23373643 - 23373540
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||||||||||||||||||||| ||| ||||||| | ||||||||||| |||||| || ||| ||||||| ||||||||||| ||||| || |||||     
T  23373643 tatctttagggaaatatgctctttcgaccctctaacattatggaaatatgctcttttaactctccatcttta-ggaaataagctcttttgaccctttata 23373545  T
Q  225 tttac 229  Q
    |||||    
T  23373544 tttac 23373540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 21801303 - 21801406
Alignment:
Q  134 ggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaa 233  Q
    ||||||||| ||||||||| ||||||||| ||| ||||||| | |||||||  | ||| ||||| |||||||||| ||||| || ||||||||||| |||    
T  21801303 ggaaatatgttcttttgaccctctaactttatgaaaatatgttattttgactatttat-tttagagaaataagctcttttgaccctttatctttacaaaa 21801401  T
Q  234 aattg 238  Q
    |||||    
T  21801402 aattg 21801406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 6798130 - 6798070
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctcta 190  Q
    |||||||||||||||||||||||| ||||||| | | ||||||||||| |||||||||||||    
T  6798130 tttagggaaatatgctcttttgaccctctaacataagggaaatatgat-ttttgaccctcta 6798070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 47113201 - 47113269
Alignment:
Q  128 ctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatcttta 196  Q
    ||||||||||||||||||||||| | ||||| ||| | ||||||| ||||||||| |||| ||||||||    
T  47113201 ctttagggaaatatgctcttttggccctctatctttagggaaataagatcttttggccctttatcttta 47113269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 235
Target Start/End: Original strand, 21809866 - 21809991
Alignment:
Q  110 tgaaaattctgtcct-tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagct 208  Q
    |||||||| |||||| ||| || | ||||||||| ||||||| | ||||||||| ||| ||||||| | |||||||  | ||| ||||  ||||||||||    
T  21809866 tgaaaattgtgtcctctatattaacggaaatatgttcttttgtccctctaactttatgcaaatatgttattttgactatttat-tttaaagaaataagct 21809964  T
Q  209 attttggccatttatctttacgaaaaa 235  Q
    |||||| || ||||||||||| |||||    
T  21809965 attttgaccctttatctttacaaaaaa 21809991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 15681685 - 15681742
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||||||||||||||||| | ||||| | | |||| ||||||||||||||||    
T  15681685 tttagggaaatatgctcttttgaccccctaacataagggaactatgatcttttgaccc 15681742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 24464663 - 24464720
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||||||| ||||||||| | ||||| | | |||||||||||||||||||||    
T  24464663 tttagggaaatatgttcttttgaccccctaacataagggaaatatgatcttttgaccc 24464720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 15867650 - 15867555
Alignment:
Q  128 ctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttat 223  Q
    ||||||| ||||||||||||||||| ||||| ||| |  |||||||||||||||| || | | |||| || |||||| | |||||| ||| |||||    
T  15867650 ctttaggaaaatatgctcttttgaccctctatctttagagaaatatgatcttttgcccttttgtcttaagagaaatatgttatttttgccctttat 15867555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 42271352 - 42271391
Alignment:
Q  63 ccctctaagtttcaaaatgttacgattttggtctcctatt 102  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  42271352 ccctctaagtttcaaaatgttgcgattttggcctcctatt 42271391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 3562716 - 3562678
Alignment:
Q  64 cctctaagtttcaaaatgttacgattttggtctcctatt 102  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  3562716 cctctaagtttcaaaatgttacgattttggccccctatt 3562678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 4193638 - 4193703
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatcttt 195  Q
    |||||||||||||||||||||||| || |||| | |  ||||||||||||||||||||  |||||||    
T  4193638 tttagggaaatatgctcttttgaccct-taacataagagaaatatgatcttttgaccccttatcttt 4193703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 4571560 - 4571503
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    ||||||||||||||||||||| || |  |||| | | |||||||||||||||||||||    
T  4571560 tttagggaaatatgctctttttaccccataacataagggaaatatgatcttttgaccc 4571503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 25002795 - 25002851
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||| ||||||||||||| | ||||| | | |||||||||||||||||||||    
T  25002795 tttagggaaacatgctcttttgaccc-ctaacataaaggaaatatgatcttttgaccc 25002851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 26126342 - 26126398
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||||||||| ||||||| | ||||| | | |||||||||||||||||||||    
T  26126342 tttagggaaatatgcttttttgaccc-ctaacataagggaaatatgatcttttgaccc 26126398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 43251352 - 43251417
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctt 194  Q
    |||||| |||| | |||||||||| ||||||| | | ||||||||||||||||||| || ||||||    
T  43251352 tttaggaaaatgtactcttttgaccctctaacataagggaaatatgatcttttgactctttatctt 43251417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 3403266 - 3403214
Alignment:
Q  131 tagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttga 183  Q
    |||| ||||||||||||||||| | ||||| | | ||||||||||||||||||    
T  3403266 taggaaaatatgctcttttgaccccctaacataagggaaatatgatcttttga 3403214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 125 - 308
Target Start/End: Complemental strand, 6285429 - 6285246
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||||||  ||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||| |||||||| ||||||| | ||| |||||||||    
T  6285429 tatctttagaaaaatatgctcttttgaccctctaactttatgaaaatatgctcttttgaccctctatatttagggatataagctctattgaccatttatc 6285330  T
Q  225 tttacgaaaaattgcagctttggcctcctattttaggacatttagtgtcttctcagcagctttataacgttttgtaaaattaag 308  Q
    ||||| |||| |||||  |||| || | |||||   ||||| | | ||||||||| || ||||  |||||||||||||||||||    
T  6285329 tttacaaaaagttgcaattttgaccccttatttcgagacatgtggcgtcttctcaacaactttgcaacgttttgtaaaattaag 6285246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 125 - 307
Target Start/End: Complemental strand, 28552570 - 28552387
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||||||  |||||||||||||||||  |||||||| ||| ||||||| |||||| |||||||||||||||||||||||||| ||||| || || |||    
T  28552570 tatctttagaaaaatatgctcttttgaccttctaactttatgaaaatatgctcttttaaccctctatctttagggaaataagctcttttgacccttaatc 28552471  T
Q  225 tttacgaaaaattgcagctttgg-cctcctattttaggacatttagtgtcttctcagcagctttataacgttttgtaaaattaa 307  Q
    ||||| |||| |||||  ||||| || ||||||||  ||||  | |  |||||| ||||| |||  ||||||||||||||||||    
T  28552470 tttacaaaaagttgcaattttggcccccctattttgagacacgtggcatcttctaagcaggtttgcaacgttttgtaaaattaa 28552387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 14366386 - 14366496
Alignment:
Q  124 ttatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttat 223  Q
    |||||||||||| |||||||||||||||||||||||||| | | ||||||||| | ||| ||||||||||||| ||||||||| | |||| ||| || ||    
T  14366386 ttatctttaggggaatatgctcttttgacactctaactttaggaaaatatgatttgttgcccctctatctttaaggaaataagatctttttgcccttcat 14366485  T
Q  224 ctttacgaaaa 234  Q
    |||||| ||||    
T  14366486 ctttacaaaaa 14366496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 39386494 - 39386573
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagct 208  Q
    |||||||||||||||||||||||| ||||||||| |  |||||||||| ||||||||||| ||||||||  |||||||||    
T  39386494 tttagggaaatatgctcttttgaccctctaactttacagaaatatgatattttgaccctccatctttagacaaataagct 39386573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 34500404 - 34500482
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaat 203  Q
    |||| |||||||||||||||||||| || ||||||||| |  ||||||||||||||||| |||||||||||||| ||||    
T  34500404 tatcattagggaaatatgctcttttaaccctctaactttagtgaaatatgatcttttgatcctctatctttaggcaaat 34500482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 36486446 - 36486333
Alignment:
Q  127 tctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctt 226  Q
    |||||| |||||||||||||||||||  ||||||||  || ||||||  | ||||||||||| ||||||||  ||||||||  ||||| || ||||||||    
T  36486446 tctttaaggaaatatgctcttttgactgtctaactttgtgaaaatatatttttttgaccctcgatctttagataaataagcacttttgaccctttatctt 36486347  T
Q  227 tacgaaaaattgca 240  Q
    ||| |||| |||||    
T  36486346 tacaaaaagttgca 36486333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 21148066 - 21148123
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||||||||||||||||| | ||||| | | |||||||||||||||||||||    
T  21148066 tttagggaaatatgctcttttgaccccctaacataagggaaatatgatcttttgaccc 21148123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 16551860 - 16551803
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||||||||||||||||| | ||||| |||   |||||||||||||||||||    
T  16551860 tttagggaaatatgctcttttgaccccctaacatcagacaaatatgatcttttgaccc 16551803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 22786118 - 22786174
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    ||||||||||||||||||||||||| |||||| | |  ||||||||||||||||||||    
T  22786118 tttagggaaatatgctcttttgaca-tctaacataagtgaaatatgatcttttgaccc 22786174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 29182223 - 29182160
Alignment:
Q  122 ccttatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||| ||||| |||||||||||||||||| | ||||| | | |||||||||||||||||||||    
T  29182223 ccttatgtttagagaaatatgctcttttgac-ccctaacataagggaaatatgatcttttgaccc 29182160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 10341143 - 10341223
Alignment:
Q  124 ttatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaata 204  Q
    |||| ||||||||||||| || ||||| | ||| | ||| | |||||||| ||||||||||||| ||| |||| |||||||    
T  10341143 ttatttttagggaaatatactattttggccctccatctttagggaaatatcatcttttgaccctttatgtttatggaaata 10341223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 28552308 - 28552363
Alignment:
Q  49 taaagtgcatttttc--cctctaagtttcaaaatgttacgattttggtctcctatt 102  Q
    ||||||||| |||||  || ||||||||||||||||| ||||||||||| ||||||    
T  28552308 taaagtgcacttttcgccccctaagtttcaaaatgttgcgattttggtcccctatt 28552363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 146 - 308
Target Start/End: Original strand, 2123447 - 2123609
Alignment:
Q  146 ttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaaaattgcagcttt 245  Q
    ||||||| |||||| || || |||||||| |||||||| |||||||||||||||||||||| | ||||| || ||||||||||| |||| |||||  |||    
T  2123447 ttttgaccctctaagtttatagaaatatgctcttttgatcctctatctttagggaaataagttcttttgaccctttatctttacaaaaagttgcaatttt 2123546  T
Q  246 ggcctcctattttaggacatttagtgtcttctcagcagctttataacgttttgtaaaattaag 308  Q
    | |  ||| |||| |||||| | | |||||||||||| ||||  ||||||| |||||||||||    
T  2123547 gacaccctgttttgggacatgtggcgtcttctcagcatctttgcaacgtttcgtaaaattaag 2123609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 136 - 308
Target Start/End: Original strand, 36199507 - 36199678
Alignment:
Q  136 aaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaaaa 235  Q
    |||||||||||||||||  | |||||| ||| ||||||| | ||||||| ||||||||||||| |||||||| |||||  || ||||||||||| ||||     
T  36199507 aaatatgctcttttgaccatttaactttatgaaaatatgcttttttgacactctatctttaggaaaataagcaattttaaccctttatctttacaaaaag 36199606  T
Q  236 ttgcagctttggcctcctattttaggacatttagtgtcttctcagcagctttataacgttttgtaaaattaag 308  Q
    |||||  |||| || |||||||| | |||| | | |||| || |||||||||| ||| |||||||||||||||    
T  36199607 ttgcaattttgacc-cctattttggaacatatggcgtctcctaagcagctttacaacattttgtaaaattaag 36199678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 32678166 - 32677992
Alignment:
Q  43 aaaggttaaagtgcatttttc--cctctaagtttcaaaatgttacgattttggtctcctattnnnnnnntgaaaattctgtcct-tatctttagggaaat 139  Q
    ||||| |||||| ||||||||  || |||||||| |||||||||||||||| ||||| ||||       | |||| | || ||| |||||| | ||||||    
T  32678166 aaaggctaaagtacatttttcttcccctaagttttaaaatgttacgattttagtctcttattaaaaaaataaaaaatttgccctctatcttcaaggaaat 32678067  T
Q  140 atgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttg 214  Q
    ||||||||||||| ||||||||| ||||||||||| |||||| || || || ||||||||||||| ||| |||||    
T  32678066 atgctcttttgaccctctaactttatggaaatatgctcttttaactctatacctttagggaaatacgctcttttg 32677992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 13646054 - 13645965
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttg 214  Q
    |||||||| ||||||||||| ||||||| ||||||||  ||| ||||||| |||||| |||||||||||||||| ||||||||| |||||    
T  13646054 tatctttacggaaatatgctgttttgaccctctaactgtatgtaaatatgctcttttaaccctctatctttaggaaaataagctcttttg 13645965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 33199546 - 33199613
Alignment:
Q  167 gaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaaa 234  Q
    |||||||| |||||||||| |||| ||||||||||||| ||| |||||||| ||||||||||| ||||    
T  33199546 gaaatatgctcttttgaccttctaactttagggaaatatgctcttttggccttttatctttacaaaaa 33199613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 331800 - 331854
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttga 183  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||| | ||||||    
T  331800 tttagggaaatatgctcttttgaccctctaacttaagggaaatatgcttttttga 331854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 2190620 - 2190687
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatcttta 196  Q
    |||||||||||||||||||||||| ||||||||| | | ||||||| || |||| |||  ||||||||    
T  2190620 tttagggaaatatgctcttttgaccctctaacttaaggaaaatatgctcgtttggccccttatcttta 2190687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 6764002 - 6763963
Alignment:
Q  63 ccctctaagtttcaaaatgttacgattttggtctcctatt 102  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  6764002 ccctctaagtttcaaaatgttgcgattttggtcccctatt 6763963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 15735083 - 15735122
Alignment:
Q  63 ccctctaagtttcaaaatgttacgattttggtctcctatt 102  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  15735083 ccctctaagtttcaaaatgttgcgattttggtcccctatt 15735122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 2123468 - 2123529
Alignment:
Q  135 gaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatcttta 196  Q
    |||||||||||||||||  ||||| ||| | ||||||| | |||||||||||| ||||||||    
T  2123468 gaaatatgctcttttgatcctctatctttagggaaataagttcttttgaccctttatcttta 2123529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 2190625 - 2190698
Alignment:
Q  166 ggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaaaattgc 239  Q
    ||||||||| ||||||||||||||| ||| ||| ||||| |||  |||||||  |||||||||| |||| ||||    
T  2190625 ggaaatatgctcttttgaccctctaacttaaggaaaatatgctcgtttggccccttatctttacaaaaagttgc 2190698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 33199546 - 33199607
Alignment:
Q  135 gaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatcttta 196  Q
    ||||||||||||||||||  |||||||| | ||||||||| ||||||| || | ||||||||    
T  33199546 gaaatatgctcttttgaccttctaactttagggaaatatgctcttttggccttttatcttta 33199607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 331805 - 331853
Alignment:
Q  166 ggaaatatgatcttttgaccctctatctttagggaaataagctattttg 214  Q
    ||||||||| ||||||||||||||| ||| ||||||||| ||| |||||    
T  331805 ggaaatatgctcttttgaccctctaacttaagggaaatatgcttttttg 331853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 26829143 - 26829111
Alignment:
Q  326 ggggacaaaatcgcatctttttgaaacttaagg 358  Q
    |||| ||||||||||||||||||||||||||||    
T  26829143 ggggccaaaatcgcatctttttgaaacttaagg 26829111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 16291934 - 16291825
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||| ||||||||||||||||||||| ||||||||| | ||||||||| ||||||  ||||||||||||||||||||||| | ||||| ||  |||||    
T  16291934 tatcttcagggaaatatgctcttttgaccctctaactttagggaaatatgctcttttagccctctatctttagggaaataagatcttttgtccccttatc 16291835  T
Q  225 tttacgaaaa 234  Q
    ||||| ||||    
T  16291834 tttacaaaaa 16291825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 308
Target Start/End: Original strand, 14857424 - 14857565
Alignment:
Q  167 gaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaaaattgcagctttggcctcctattttaggacatt 266  Q
    |||||| | |||||| ||||||||||||||| |||||||||| ||||| || ||||||||||| |||| || ||  ||| ||| |||||||| |||||      
T  14857424 gaaataagctcttttaaccctctatctttagagaaataagctcttttgaccctttatctttacaaaaagtttcaatttttgccccctattttgggacaca 14857523  T
Q  267 tagtgtcttctcagcagctttataacgttttgtaaaattaag 308  Q
    | | |||||||||   ||||   |||||||||||||||||||    
T  14857524 tggcgtcttctcatttgcttcgcaacgttttgtaaaattaag 14857565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 308
Target Start/End: Original strand, 53097271 - 53097453
Alignment:
Q  126 atctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatct 225  Q
    ||||||| | ||||||||||||| ||| ||| ||||| |  |||||||| | |||||  |||||||||||||| ||||||| | ||||  || ||||||     
T  53097271 atctttatgaaaatatgctctttcgaccctccaactttagcgaaatatgctattttggtcctctatctttaggaaaataagatcttttaaccctttatca 53097370  T
Q  226 ttacgaaaaattgcagctttggcctcc-tattttaggacatttagtgtcttctcagcagctttataacgttttgtaaaattaag 308  Q
    |||  |||| |||  | ||| |||||| |||||||  |||| | | |||||||||||||||||  |||||||||||||||||||    
T  53097371 ttataaaaagttgt-gattttgcctccctattttaaaacatgtggcgtcttctcagcagcttttgaacgttttgtaaaattaag 53097453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 55264967 - 55265069
Alignment:
Q  136 aaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaaaa 235  Q
    ||||||||||||||||| ||||||||| | | ||||||| | |||| ||||| |||||||||||||||||| ||||| | |  ||||||||||| ||||     
T  55264967 aaatatgctcttttgaccctctaactttaggaaaatatgttttttt-accctttatctttagggaaataagatatttcgactctttatctttacaaaaag 55265065  T
Q  236 ttgc 239  Q
    ||||    
T  55265066 ttgc 55265069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 5932306 - 5932229
Alignment:
Q  124 ttatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaa 202  Q
    ||||||||||| ||||||||||||||||| || ||||||||  |||||| | |||||||||| |||||||||| |||||    
T  5932306 ttatctttaggtaaatatgctcttttgac-ctttaacttcagagaaataagttcttttgaccatctatctttaaggaaa 5932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 16291937 - 16291863
Alignment:
Q  154 ctctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatcttta 228  Q
    ||||| ||||| ||||||||| ||||||||||||||| ||||||||||||| ||| |||| ||| | ||||||||    
T  16291937 ctctatcttcagggaaatatgctcttttgaccctctaactttagggaaatatgctcttttagccctctatcttta 16291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 16588641 - 16588539
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||||| | ||||||||||||||||| ||| ||||| | || ||||||   ||||| |||||||||||||   ||||||| |||||||||| ||||||    
T  16588641 tatctttaagaaaatatgctcttttgaccctccaactttagggtaatatgcgattttggccctctatctttaataaaataagatattttggccctttatc 16588542  T
Q  225 ttt 227  Q
    |||    
T  16588541 ttt 16588539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 12101379 - 12101264
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    ||||||||| |||||||||| ||||||| ||||||||| |  |||||||| |  ||||   ||||||||||||| ||||||| | |||| |||  |||||    
T  12101379 tatctttagagaaatatgcttttttgaccctctaactttagagaaatatgcttctttggtactctatctttaggaaaataagttcttttagcctgttatc 12101280  T
Q  225 tttacgaaaaattgca 240  Q
    ||||| |||| |||||    
T  12101279 tttacaaaaagttgca 12101264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 4098748 - 4098801
Alignment:
Q  133 gggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||||||||||||| | ||||| | | |||||||||||||||||||||    
T  4098748 gggaaatatgctcttttgaccccctaacataagggaaatatgatcttttgaccc 4098801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 9397281 - 9397346
Alignment:
Q  131 tagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatcttta 196  Q
    |||||||||||||||||||||| ||||||| | | ||||||||| | |||| ||||| ||||||||    
T  9397281 tagggaaatatgctcttttgaccctctaacataaaggaaatatgtttttttaaccctttatcttta 9397346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 51291386 - 51291329
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||||||| ||||||||| | ||||| | | |||||||||||||||||||||    
T  51291386 tttagggaaatatgttcttttgaccccctaacataagggaaatatgatcttttgaccc 51291329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 43336181 - 43336145
Alignment:
Q  168 aaatatgatcttttgaccctctatctttagggaaata 204  Q
    ||||||||||||||||||||||| |||||||||||||    
T  43336181 aaatatgatcttttgaccctctaactttagggaaata 43336145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 24626437 - 24626382
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgac 184  Q
    |||||||||||||||||||||||| |  |||| | | |||||||||||||||||||    
T  24626437 tttagggaaatatgctcttttgactcaataacataagggaaatatgatcttttgac 24626382  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 1521635 - 1521598
Alignment:
Q  271 gtcttctcagcagctttataacgttttgtaaaattaag 308  Q
    |||||||||||||||||  |||||||||||||||||||    
T  1521635 gtcttctcagcagctttggaacgttttgtaaaattaag 1521598  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 13764290 - 13764363
Alignment:
Q  124 ttatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttag 197  Q
    |||||||||||||||| |||||| ||||| || || ||  ||| ||||||| |||||| | |||||||||||||    
T  13764290 ttatctttagggaaatgtgctctattgaccctatatctatatgaaaatatgttcttttaaacctctatctttag 13764363  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 16588630 - 16588570
Alignment:
Q  168 aaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatcttta 228  Q
    ||||||| ||||||||||||| | |||||||| |||| || ||||||||| | ||||||||    
T  16588630 aaatatgctcttttgaccctccaactttagggtaatatgcgattttggccctctatcttta 16588570  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 16964656 - 16964716
Alignment:
Q  168 aaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatcttta 228  Q
    ||||||| | |||| | |||||| ||||||  ||||| |||||||||||||||||||||||    
T  16964656 aaatatgctttttttatcctctaactttagaaaaatatgctattttggccatttatcttta 16964716  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 43336157 - 43336090
Alignment:
Q  128 ctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatcttta 196  Q
    ||||||||||||||| |||||||||  |||| ||| ||||||||| |||  ||||||||| ||||||||    
T  43336157 ctttagggaaatatgttcttttgaccttctatctttatggaaataagat-gtttgaccctttatcttta 43336090  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 2053234 - 2053331
Alignment:
Q  131 tagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatcttta 228  Q
    |||||||||||||||||||||   |||||||| ||||||||||| |||||| ||||||||||||||| |||||||||| ||||| || |||| |||||    
T  2053234 tagggaaatatgctcttttgatcatctaactttatggaaatatgctcttttaaccctctatctttagagaaataagctcttttgaccctttaccttta 2053331  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 39910291 - 39910213
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaat 203  Q
    |||| |||||||||||||||||||| || ||||||||| |  ||||||||||||||||| |||||||||||||| ||||    
T  39910291 tatcattagggaaatatgctcttttaaccctctaactttagtgaaatatgatcttttgatcctctatctttaggcaaat 39910213  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 13190789 - 13190860
Alignment:
Q  168 aaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaaaattgc 239  Q
    ||||||| |||||| |||||||||||||| | ||||||| |||||||| ||||||||||||| |||| ||||    
T  13190789 aaatatgctcttttcaccctctatctttaagaaaataagatattttggtcatttatctttacaaaaatttgc 13190860  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 22845721 - 22845766
Alignment:
Q  169 aatatgatcttttgaccctctatctttagggaaataagctattttg 214  Q
    |||||| ||||||||||||||||||||||  ||||||||| |||||    
T  22845721 aatatgttcttttgaccctctatctttagaaaaataagctcttttg 22845766  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 15869560 - 15869490
Alignment:
Q  122 ccttatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctt 194  Q
    |||||| ||||| |||||||||||||||||| ||||||| | |  ||||||||||||||||||| ||| ||||    
T  15869560 ccttatgtttagagaaatatgctcttttgac-ctctaac-taagagaaatatgatcttttgaccatctgtctt 15869490  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 38630054 - 38630113
Alignment:
Q  45 aggttaaagtgcatttttc--cctctaagtttcaaaatgttacgattttggtctcctatt 102  Q
    |||||||| | ||||||||  |||||||||||||||||||| |||||||| || ||||||    
T  38630054 aggttaaacttcatttttcgccctctaagtttcaaaatgttgcgattttgatcccctatt 38630113  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 125 - 314
Target Start/End: Original strand, 29365342 - 29365531
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    ||||||||||||||| |||||||||||  | |||| || | |||||||   | |||||||||| ||| ||| | |||||||||| |||||||| ||||||    
T  29365342 tatctttagggaaatgtgctcttttgatcccctaattttagggaaatacacttttttgaccctttatattttgagaaataagctcttttggccctttatc 29365441  T
Q  225 tttacgaaaaattgcagctttggcctcctattttaggacatttagtgtcttctcagcagctttataacgttttgtaaaattaagagataa 314  Q
    ||||| |||| |||||  ||||||| ||   ||| | |||  | | |||||||||||||||||  ||||||||||||||||||| |||||    
T  29365442 tttacaaaaagttgcaattttggccccccgctttggcacacatggcgtcttctcagcagctttgcaacgttttgtaaaattaagggataa 29365531  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 34192332 - 34192228
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||||| ||||||||||| ||||||| ||| ||||| | ||||| ||    ||||| ||||||||||||||| ||||||| |||||| ||| ||||||    
T  34192332 tatctttatggaaatatgcttttttgaccctcaaactttagggaaaaatacaattttggccctctatctttaggaaaataagatattttagccctttatc 34192233  T
Q  225 tttac 229  Q
    |||||    
T  34192232 tttac 34192228  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 9620513 - 9620583
Alignment:
Q  168 aaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaaaattg 238  Q
    ||||||| ||||||||  |||||||||||| |||||||||| ||||||||  |||| ||||| ||||||||    
T  9620513 aaatatgctcttttgattctctatctttagagaaataagctcttttggccccttatttttacaaaaaattg 9620583  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 283
Target Start/End: Complemental strand, 11661173 - 11661015
Alignment:
Q  125 tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatc 224  Q
    |||||||| ||||||||| ||||||||| || || |   | ||||||||| |||| |  ||||||||||||| ||||||| ||| ||||  ||  |||||    
T  11661173 tatctttaaggaaatatgttcttttgaccctatatcaatagggaaatatgttcttgtacccctctatctttaaggaaatatgctctttttcccccttatc 11661074  T
Q  225 tttacgaaaaattgcagctttggcctcctattttaggacatttagtgtcttctcagcag 283  Q
    ||||| |||| ||||   ||||||| | |||||| |||||| | ||||||||| |||||    
T  11661073 tttacaaaaagttgcgattttggccccttattttgggacatgtggtgtcttctaagcag 11661015  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 12193542 - 12193588
Alignment:
Q  168 aaatatgatcttttgaccctctatctttagggaaataagctattttg 214  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||    
T  12193542 aaatatgttcttttgtccctctatctttagggaaatatgctattttg 12193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 4013883 - 4013826
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    |||||||||||||||||||||||| | ||||  | | |||||||||||||||||||||    
T  4013883 tttagggaaatatgctcttttgaccccctaatataagggaaatatgatcttttgaccc 4013826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 15298789 - 15298739
Alignment:
Q  45 aggttaaagtgcatttttc--cctctaagtttcaaaatgttacgattttgg 93  Q
    |||||||||||||||||||  |||||| ||||||||||||| |||||||||    
T  15298789 aggttaaagtgcatttttcgccctctatgtttcaaaatgttgcgattttgg 15298739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 34192335 - 34192255
Alignment:
Q  154 ctctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagctattttggccatttatctttacgaaaa 234  Q
    ||||| ||| ||||||||||| | ||||||||||| | ||||||||||| |  | ||||||||| | |||||||| |||||    
T  34192335 ctctatctttatggaaatatgcttttttgaccctcaaactttagggaaaaatacaattttggccctctatctttaggaaaa 34192255  T

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Target: scaffold0019 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 35849 - 35946
Alignment:
Q  112 aaaattctgtcct-tatctttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccctctatctttagggaaataagct 208  Q
    |||||| |||||| ||||||||| |||||||||||||||||  ||||||||| ||||||||||  |||||| | ||| |||||||||| |||||||||    
T  35849 aaaattgtgtcctctatctttagagaaatatgctcttttgatcctctaactttatggaaatatactcttttaatcctttatctttaggaaaataagct 35946  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 455018 - 455075
Alignment:
Q  129 tttagggaaatatgctcttttgacactctaacttcatggaaatatgatcttttgaccc 186  Q
    ||||||||||||||||||||| || | ||||| | | ||||||| |||||||||||||    
T  455018 tttagggaaatatgctcttttaaccccctaacataaaggaaatacgatcttttgaccc 455075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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