View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905-Insertion-8 (Length: 465)
Name: NF5905-Insertion-8
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 366
Target Start/End: Original strand, 32773340 - 32773691
Alignment:
| Q |
15 |
ataggtacatatataaattgtgacacatttcataggatatgcaaacaagaccatcatttattctgagtttataaactttaaatttaaattttactatctc |
114 |
Q |
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| T |
32773340 |
ataggtacacatataaattgtgacacatttcataggacatgcaatcaagaccatcattatttctgagtttataaattttaaatttaaattttactatctc |
32773439 |
T |
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| Q |
115 |
ttaatttctttcaatggctccaacacatgcattgaagcgcacaaattctatagcagataatatgcctgatgcattgaggaagagtagataccatatgaag |
214 |
Q |
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| T |
32773440 |
ttaatttctttcaatggctccaacacatgcattgaagcgcacaaattctatagcagataacatgcctgatgcattgaggaagagtagataccatatgaag |
32773539 |
T |
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| Q |
215 |
aagtgttttgctaagtacctagaaaaagggagaagaatcatgaaacttgatgaattaatggaagtagtggaacgaactatagatgatataaatgaaagac |
314 |
Q |
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| T |
32773540 |
aagtgctttgctaagtacctagaaaaagggagaagaatcatgaaacttcatgaattaatggaagaagtggaacgaactatagatgatataaatgaaagaa |
32773639 |
T |
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| Q |
315 |
attatgttttggagggaattcttggctttatactgagctctacacaggttct |
366 |
Q |
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| T |
32773640 |
attatattttggagggaaatcttggctttatattgagctctacacaggttct |
32773691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 29122012 - 29121916
Alignment:
| Q |
182 |
gatgcattgaggaagagtagataccatatgaagaagtgttttgctaagtacctagaaaaagggagaagaatcatgaaacttgatgaattaatggaag |
278 |
Q |
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| T |
29122012 |
gatgcatcgaagcagagtagataccatatgaagaggtgttttgccaagtaccttgagaaaggtagaaggatcataaaagttcatgatttgatggaag |
29121916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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