View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905_high_11 (Length: 482)

Name: NF5905_high_11
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905_high_11
NF5905_high_11
[»] chr3 (2 HSPs)
chr3 (19-363)||(11135387-11135730)
chr3 (387-475)||(11135841-11135929)
[»] chr2 (2 HSPs)
chr2 (19-363)||(7312866-7313213)
chr2 (387-475)||(7313324-7313410)
[»] chr8 (3 HSPs)
chr8 (19-363)||(21936287-21936629)
chr8 (19-337)||(36599527-36599843)
chr8 (412-475)||(36598684-36598747)
[»] scaffold0010 (2 HSPs)
scaffold0010 (19-355)||(246890-247224)
scaffold0010 (412-475)||(246684-246747)
[»] chr7 (3 HSPs)
chr7 (19-355)||(37280974-37281308)
chr7 (147-337)||(11099162-11099349)
chr7 (412-475)||(37281451-37281514)
[»] chr6 (2 HSPs)
chr6 (147-337)||(17997980-17998167)
chr6 (412-475)||(8650722-8650785)
[»] scaffold0894 (1 HSPs)
scaffold0894 (413-475)||(692-754)
[»] chr4 (1 HSPs)
chr4 (153-193)||(28925762-28925802)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 11135387 - 11135730
Alignment:
Q  19 caattacaccatactatgtttctatgcaactcaacacaatcttaaaagttcatgatttttgcgcagttttaaaatatgtacctgactccttatggatgat 118  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  11135387 caattacaccatactatgtttctaggcaactcaacgcaatcttaaaagttcatgacttttgtgcagttttaaaatatgtacctgactccttatggatgat 11135486  T
Q  119 ttcaaaagtatgaaagattaaaacttacagtgaagtcgatcataccatgctcttttagtttctgtagcagccaaaatgagtttgatgcatttgaacgcct 218  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11135487 ttcaaaagtataaaagattaaaacttaccgtgacgtcgatcataccatgctcttttagtttctgtagcagccaaaatgagtttgatgcattt-aacgcct 11135585  T
Q  219 taaaatcagcatatcgatactgtcagttgttctggcttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagcatcctat 318  Q
    |||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11135586 taaaatcaacatatcgatactatcagttgtcctgccttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagcatcctat 11135685  T
Q  319 acccatgctttctttattctaaccttttttcgtggtatagcctat 363  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  11135686 acccatgctttctttattctaacctttcttcgtggtatagcctat 11135730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 11135841 - 11135929
Alignment:
Q  387 aactaaattaattcgccgattgaatatatatattatgatccttatgcgcataatctggtataacgctacgttacgatttgatgatgtcc 475  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  11135841 aactaaattaattcgccaattgaatgtatatattatgatccttatgcgcataatctggtataacgctacgttacggtttgttgatgtcc 11135929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 7312866 - 7313213
Alignment:
Q  19 caattacaccatactatgtttctatgcaactcaacacaatcttaaaagttcatgatttttgcgcagttttaaaatatgtacctgactccttatggatgat 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  7312866 caattacaccatactatgtttctaggcaactcaacacaatcttaaaagttcatgacttttgtgcagttttaaaatatgtacctgattccttatggatgat 7312965  T
Q  119 ttcaaaagtatgaaagattaaaacttacagtgaa-----gtcgat-cataccatgctcttttagtttctgtagcagccaaaatgagtttgatgcatttga 212  Q
    |||||| |||||||||||||||||||||||||||     || ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||  |    
T  7312966 ttcaaatgtatgaaagattaaaacttacagtgaaaatgagttgatacataccatgctcttttagtttctgtagcagccaaaatgagtt-gatacatt--a 7313062  T
Q  213 acgccttaaaatcagcatatcgatactgtcagttgttctggcttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagca 312  Q
    | |||||||||||||||||||||| || ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7313063 atgccttaaaatcagcatatcgatgctatcagtcgtcttggcttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagca 7313162  T
Q  313 tcctatacccatgctttctttattctaaccttttttcgtggtatagcctat 363  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7313163 tcctatacccatgctttctttattctaacctttcttcgtggtatagcctat 7313213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 7313324 - 7313410
Alignment:
Q  387 aactaaattaattcgccgattgaatatatatattatgatccttatgcgcataatctggtataacgctacgttacgatttgatgatgtcc 475  Q
    ||||||||||||||||| |||||||||  |||||||||||||||||| ||||| |||||||||| || | ||||| |||| ||||||||    
T  7313324 aactaaattaattcgccaattgaatat--atattatgatccttatgcacataacctggtataacactgctttacggtttgttgatgtcc 7313410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 21936629 - 21936287
Alignment:
Q  19 caattacaccatactatgtttctatgcaa-ctcaacacaatcttaaaagttcatgatttttgcgcagttttaaaatatgtacctgactccttatggatga 117  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  21936629 caattacaccatactatgtttctaggcaaactcaacgcaatcttaaaagttcatgacttttgtgcagttttaaaatatgtacctgattccttatggatga 21936530  T
Q  118 tttcaaaagtatgaaagattaaaacttacagtgaagtcgatcataccatgctcttttagtttctgtagcagccaaaatgagtttgatgcatttgaacgcc 217  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |  | ||||||    
T  21936529 tttcaaatgtatgaaagtttaaaacttacggtgaagtcgatcataccatgctcttttagtttctgtagcagccaaaatgag-ttgat--acgtcaacgcc 21936433  T
Q  218 ttaaaatcagcatatcgatactgtcagttgttctggcttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagcatccta 317  Q
    ||||||||||||||||||| || ||||| |  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  21936432 ttaaaatcagcatatcgatgctatcagtcgccctggcttgtcatcttgattcctcctccaaactttttcgccctttaacttgtttatcaatagcatccta 21936333  T
Q  318 tacccatgctttctttattctaaccttttttcgtggtatagcctat 363  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||    
T  21936332 tacccatgctttctttattctaacctttcttcgtggtacagcctat 21936287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 36599843 - 36599527
Alignment:
Q  19 caattacaccatactatgtttctatgcaa-ctcaacacaatcttaaaagttcatgatttttgcgcagttttaaaatatgtacctgactccttatggatga 117  Q
    ||||||||||||| ||||||||||  ||| |||||||  ||||||||||||||||| ||||  ||||||||||||||||||||||| | |||||||||||    
T  36599843 caattacaccataatatgtttctagacaaactcaacatcatcttaaaagttcatgacttttctgcagttttaaaatatgtacctgatttcttatggatga 36599744  T
Q  118 tttcaaaagtatgaaagattaaaacttacagtgaagtcgatcataccatgctcttttagtttctgtagcagccaaaatgagtttgatgcatttgaacgcc 217  Q
    || |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||  || | | ||||    
T  36599743 ttccaaaggtatgaaagtttaaaacttacagtgaagtcgatcacaccatgctcttttagtttctgtagcagccaaaatgag-ttgat--atgtcatcgcc 36599647  T
Q  218 ttaaaatcagcatatcgatactgtcagttgttctggcttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagcatccta 317  Q
    ||||||||||||||||||| || ||||| |  ||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||    
T  36599646 ttaaaatcagcatatcgatgctatcagtagccctggcttgtcatcttgattcctcctccaaactttttcaccctttaacttgtttaccaatagcatccta 36599547  T
Q  318 tacccatgctttctttattc 337  Q
    ||| ||||||||||||||||    
T  36599546 tactcatgctttctttattc 36599527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 412 - 475
Target Start/End: Complemental strand, 36598747 - 36598684
Alignment:
Q  412 atatatattatgatccttatgcgcataatctggtataacgctacgttacgatttgatgatgtcc 475  Q
    |||||||| |||||||| |||| ||||||||||||||||||| | ||||| |||| ||||||||    
T  36598747 atatatatcatgatcctcatgcacataatctggtataacgctgctttacggtttgttgatgtcc 36598684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 247224 - 246890
Alignment:
Q  19 caattacaccatactatgtttctatgcaa-ctcaacacaatcttaaaagttcatgatttttgcgcagttttaaaatatgtacctgactccttatggatga 117  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  247224 caattacaccatactatgtttctaggcaaactcaacacaatcttaaaagttcatgacttttgtgcagttttaaaatatgtacctgattccttatggatga 247125  T
Q  118 tttcaaaagtatgaaagattaaaacttacagtgaagtcgatcataccatgctcttttagtttctgtagcagccaaaatgagtttgatgcatttgaacgcc 217  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||  |  | ||||||    
T  247124 tttcaaaggtatgaaagtttaaaacttacggtgaagtcgatcataccatgctcttttagtttctgtagcagtcaaaatgag-ttgat--acgtcaacgcc 247028  T
Q  218 ttaaaatcagcatatcgatactgtcagttgttctggcttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagcatccta 317  Q
    |||||||||| |||||||| || | ||| |  || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  247027 ttaaaatcagtatatcgatgctattagtcgccctagcttgtcatcttgattcctcctccaaactttttcgccctttaacttgtttatcaatagcatccta 246928  T
Q  318 tacccatgctttctttattctaaccttttttcgtggta 355  Q
    |||||||||||||||||||||||||||| |||||||||    
T  246927 tacccatgctttctttattctaacctttcttcgtggta 246890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 412 - 475
Target Start/End: Complemental strand, 246747 - 246684
Alignment:
Q  412 atatatattatgatccttatgcgcataatctggtataacgctacgttacgatttgatgatgtcc 475  Q
    ||||||||||||||||||||||  |||||||||||||||||| | ||| | |||| ||||||||    
T  246747 atatatattatgatccttatgcatataatctggtataacgctgctttatggtttgttgatgtcc 246684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 37280974 - 37281308
Alignment:
Q  19 caattacaccatactatgtttctatgcaa-ctcaacacaatcttaaaagttcatgatttttgcgcagttttaaaatatgtacctgactccttatggatga 117  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  37280974 caattacaccatactatgtttctaggcaaactcaacacaatcttaaaagttcatgacttttgtgcagttttaaaatatgtacctgattccttatggatga 37281073  T
Q  118 tttcaaaagtatgaaagattaaaacttacagtgaagtcgatcataccatgctcttttagtttctgtagcagccaaaatgagtttgatgcatttgaacgcc 217  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||  |  | ||||||    
T  37281074 tttcaaaggtatgaaagtttaaaacttacggtgaagtcgatcataccatgctcttttagtttctgtagcagtcaaaatgag-ttgat--acgtcaacgcc 37281170  T
Q  218 ttaaaatcagcatatcgatactgtcagttgttctggcttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagcatccta 317  Q
    |||||||||| |||||||| || | ||| |  || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  37281171 ttaaaatcagtatatcgatgctattagtcgccctagcttgtcatcttgattcctcctccaaactttttcgccctttaacttgtttatcaatagcatccta 37281270  T
Q  318 tacccatgctttctttattctaaccttttttcgtggta 355  Q
    |||||||||||||||||||||||||||| |||||||||    
T  37281271 tacccatgctttctttattctaacctttcttcgtggta 37281308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 147 - 337
Target Start/End: Complemental strand, 11099349 - 11099162
Alignment:
Q  147 agtgaagtcgatcataccatgctcttttagtttctgtagcagccaaaatgagtttgatgcatttgaacgccttaaaatcagcatatcgatactgtcagtt 246  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||  || | | ||||||||||||||||||| ||| || |||||     
T  11099349 agtgaagtcgatcacaccatgctcttttagtttctgtagcagccaaaatgagtt-gat--atgtcatcgccttaaaatcagcatattgatgctatcagta 11099253  T
Q  247 gttctggcttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagcatcctatacccatgctttctttattc 337  Q
    |  ||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||| ||| ||||||||||||||||    
T  11099252 gccctggcttgtcatcttgattcctcctccaaactttttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattc 11099162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 412 - 475
Target Start/End: Original strand, 37281451 - 37281514
Alignment:
Q  412 atatatattatgatccttatgcgcataatctggtataacgctacgttacgatttgatgatgtcc 475  Q
    ||||||||||||||||||||||  |||||||||||||||||| | ||| | |||| ||||||||    
T  37281451 atatatattatgatccttatgcatataatctggtataacgctgctttatggtttgttgatgtcc 37281514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 147 - 337
Target Start/End: Original strand, 17997980 - 17998167
Alignment:
Q  147 agtgaagtcgatcataccatgctcttttagtttctgtagcagccaaaatgagtttgatgcatttgaacgccttaaaatcagcatatcgatactgtcagtt 246  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||  || | | ||||||||||||||||||| ||| || |||||     
T  17997980 agtgaagtcgatcacaccatgctcttttagtttctgtagcagccaaaatgagtt-gat--atgtcatcgccttaaaatcagcatattgatgctatcagta 17998076  T
Q  247 gttctggcttgtcatcttgattccacctccaaactttttcgccctttaacttgtctatcaatagcatcctatacccatgctttctttattc 337  Q
    |  ||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||| ||| ||||||||||||||||    
T  17998077 gccctggcttgtcatcttgattcctcctccaaactttttcaccctttaacttgtttaccaatagcatcctgtactcatgctttctttattc 17998167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 475
Target Start/End: Complemental strand, 8650785 - 8650722
Alignment:
Q  412 atatatattatgatccttatgcgcataatctggtataacgctacgttacgatttgatgatgtcc 475  Q
    |||||||| |||||||| |||| |||||||||||| |||||| | ||||| |||| ||||||||    
T  8650785 atatatatcatgatcctcatgcacataatctggtacaacgctgctttacggtttgttgatgtcc 8650722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0894 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0894
Description:

Target: scaffold0894; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 475
Target Start/End: Complemental strand, 754 - 692
Alignment:
Q  413 tatatattatgatccttatgcgcataatctggtataacgctacgttacgatttgatgatgtcc 475  Q
    ||||||||||||||||||||| |||||| |||||||||||| | ||||| |||| ||||||||    
T  754 tatatattatgatccttatgcacataatttggtataacgctgctttacggtttgttgatgtcc 692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 28925762 - 28925802
Alignment:
Q  153 gtcgatcataccatgctcttttagtttctgtagcagccaaa 193  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  28925762 gtcgatcataccatgctcttttagtgtctatagcagccaaa 28925802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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