View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_high_13 (Length: 434)
Name: NF5905_high_13
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 34991889 - 34991482
Alignment:
| Q |
1 |
agaatcaaactactagtactaat-gtatagggaatgaaaacgaggtcatcatcacactcttcagtcactgcaaatcaatctgcattgagtaaagataagt |
99 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34991889 |
agaatcaaacttctagtactaattgtatagggaatgaaaacgaggtcatcatcacactcttcagtcactgcaaatcaatctgcattgagtaaagataagt |
34991790 |
T |
|
| Q |
100 |
taaggcatcattcttctatccaaccctcgacgccttttcgacctatcgttacaaccactagatctatccaacaaagacctaagcgaattctgaagaaaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34991789 |
taaggcatcattcttctatccaaccctcgacgccttttcgacctatcgttacaaccactagatctatccaacaaagacctaagcgaattctgaagaaaat |
34991690 |
T |
|
| Q |
200 |
gaatagattcaatgctattatgttctttctcagcagcaacaacaagaacattacgtgttcttcctccaagtgtggccatttcagctttgagagtttttag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34991689 |
gaatagattcaatgctattatgttctttctcagcagcaacaacaagaacgttacgtgttcttccaccaagtgtggccatttcagctttgagagtttttag |
34991590 |
T |
|
| Q |
300 |
gtgaagagacttgaggatttcgataaggtcgggaattaggtcggagcgatcttcgcagcataatgaggctttgaatatgagtctgccttcaccggagatg |
399 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34991589 |
gtgaagagacttgaggatttcaattaggtcgggaattaggtcggagcgatcctcgcagcataatgaggctttgaatatgagtctgccttcaccggagatg |
34991490 |
T |
|
| Q |
400 |
tcactgcc |
407 |
Q |
| |
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|||||||| |
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|
| T |
34991489 |
tcactgcc |
34991482 |
T |
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