View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_high_14 (Length: 417)
Name: NF5905_high_14
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 60 - 399
Target Start/End: Complemental strand, 20144819 - 20144480
Alignment:
| Q |
60 |
aaagagaattgctaatatcaaacgctcaaacacacgccaacagacactcgcttgtatacgctgccacatcaccccttcttgttaatcattaaacttgcaa |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20144819 |
aaagagaattgctaatatcaaacgctcaaacacacgccaacggacagtcgcttgtatacgctgccacatcaccccttcttgttaatcattaaacttgcaa |
20144720 |
T |
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| Q |
160 |
ccggcttcacctgttcttcaatctcactctttcaaacaacaaacaatcaaaatctacagtaacaaacatccatgcttttttgtctaccaatatcttgcaa |
259 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20144719 |
ccggcttcacctgttcttcaatctcgctctttcaaacaacaaacaatcaaaatctacagtaacaaacatccatgcttttttgtctaccaatatcttgcaa |
20144620 |
T |
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| Q |
260 |
ctaannnnnnnacttattattaaaccctttacacttacaaataattagaaatttaaactgtggataacattcaatcgactactcgatgacggagttgttg |
359 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20144619 |
ctaatttttttacttattattaaaccctttacacttacaaataattagaaatttaaactgtggataacattcaatcgactactcgatgacggagttgttg |
20144520 |
T |
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| Q |
360 |
gcggtagcgtcaagtttcacgacagcaacaaggaggcttc |
399 |
Q |
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| T |
20144519 |
gcggtagcgtcaagtttcacgaaagcaacaaggaggcttc |
20144480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 31195018 - 31194963
Alignment:
| Q |
7 |
caatacataactttacattacattatagcaacattaaacataagttttcattcaaa |
62 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31195018 |
caatacataactttacattacattatggcaacattaaacataagttttcattcaaa |
31194963 |
T |
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