View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5905_high_15 (Length: 389)
Name: NF5905_high_15
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 32773691 - 32773340
Alignment:
| Q |
12 |
agaacctgtgtagagctcaatataaagccaagatttccctccaaaacataatgtctttcatttatatcatctatagttcgttccacttcttccattaatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32773691 |
agaacctgtgtagagctcaatataaagccaagatttccctccaaaatataatttctttcatttatatcatctatagttcgttccacttcttccattaatt |
32773592 |
T |
|
| Q |
112 |
catcaagtttcatgattcttctccctttttctaggtacttagcaaaacacttcttcatatggtatctactcttcctcaatgcatcaggcatattatctgc |
211 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32773591 |
catgaagtttcatgattcttctccctttttctaggtacttagcaaagcacttcttcatatggtatctactcttcctcaatgcatcaggcatgttatctgc |
32773492 |
T |
|
| Q |
212 |
tatagaatttgtgcgcttcaatgcatgtgttggagccattgaaagaaattaagagatagtaaaatttaaatttaaagtttataaactcagaataaatgat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
32773491 |
tatagaatttgtgcgcttcaatgcatgtgttggagccattgaaagaaattaagagatagtaaaatttaaatttaaaatttataaactcagaaataatgat |
32773392 |
T |
|
| Q |
312 |
ggtcttgtttgcatatcctatgaaatgtgtcacaatttatatatgtacctat |
363 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32773391 |
ggtcttgattgcatgtcctatgaaatgtgtcacaatttatatgtgtacctat |
32773340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 29121909 - 29122012
Alignment:
| Q |
93 |
tccacttcttccattaattcatcaagtttcatgattcttctccctttttctaggtacttagcaaaacacttcttcatatggtatctactcttcctcaatg |
192 |
Q |
| |
|
|||| ||||||||| || |||| || ||| ||||| ||||| ||||| || |||||||| ||||||||| ||||||||||||||||||||| | || ||| |
|
|
| T |
29121909 |
tccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatctactctgcttcgatg |
29122008 |
T |
|
| Q |
193 |
catc |
196 |
Q |
| |
|
|||| |
|
|
| T |
29122009 |
catc |
29122012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University