View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_high_18 (Length: 343)
Name: NF5905_high_18
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 36464945 - 36465256
Alignment:
| Q |
18 |
atatatacacatcagcaacagtttcaatatcacatacaacagaaaagttttctgagtatcagcatatatccttcaagagagcatttataaaatttgattc |
117 |
Q |
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| T |
36464945 |
atatatacacatcagcaacagtttcaatatcacatacaacagaaaagttttctcagtatcagtatatatccttcaagagagcatttataaaatttgattc |
36465044 |
T |
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| Q |
118 |
aaatggattcaagaagagaagttgaggaatcatcaacagctcccatcctagaatccaaaaggacaagaagcaatggaaaagggaaatccattgatggaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36465045 |
aaatggattcaagaagagaagttgaggaatcatcaacagctcccatcctagaatccaaaaggacaagaagcaatggaaaagggaaatccattgatggaga |
36465144 |
T |
|
| Q |
218 |
tcgttctcctccacatgctgcaactgttgttaccacaaaagctacttcactacaaaaaggtggaatgaaaaagggaattgcaatcttagactttattttg |
317 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36465145 |
tcattctcctccacatgctgcaactgttgttaccacaaaagctactccactacaaaaaggtggaatgaaaaagggaattgcaatcttagactttattttg |
36465244 |
T |
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| Q |
318 |
aggcttggtgcc |
329 |
Q |
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|||||||||||| |
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| T |
36465245 |
aggcttggtgcc |
36465256 |
T |
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