View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905_high_2 (Length: 754)

Name: NF5905_high_2
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905_high_2
NF5905_high_2
[»] chr6 (7 HSPs)
chr6 (311-725)||(8814051-8814488)
chr6 (312-735)||(7078181-7078624)
chr6 (1-308)||(8813621-8813926)
chr6 (1-308)||(7078750-7079054)
chr6 (544-613)||(26360897-26360966)
chr6 (461-516)||(7078719-7078774)
chr6 (461-516)||(8813902-8813957)
[»] chr1 (2 HSPs)
chr1 (543-666)||(21968572-21968695)
chr1 (488-525)||(31847318-31847355)
[»] chr7 (2 HSPs)
chr7 (550-706)||(42319274-42319429)
chr7 (573-626)||(41719494-41719547)
[»] chr3 (3 HSPs)
chr3 (460-524)||(2470828-2470892)
chr3 (467-527)||(25158250-25158311)
chr3 (479-524)||(9194355-9194400)
[»] chr8 (1 HSPs)
chr8 (489-519)||(24191000-24191030)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 311 - 725
Target Start/End: Original strand, 8814051 - 8814488
Alignment:
Q  311 cccacgaacttaaatcccgcaactaatgttgatttttaatggagcaaaatcacactttaattcgattatacttgtaacattaacacaaaaattcccctat 410  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8814051 cccacgaacttaaatcccactgctaatgttgatttttaatggagcaaaaccacactttaattcgattatacttgtaacattaacacaaaaattcccctat 8814150  T
Q  411 aactaatgttgattattatcgaacgtgagttaattcatgttggttttattg------------------ttggagttatttttggtagtttatgtaggaa 492  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||  |                  |||||||||||||||||||||||||||||||    
T  8814151 aactaatgttgattattatcgaacgtgagttaactcatgttggttttaccgaacgtgagttaactcacattggagttatttttggtagtttatgtaggaa 8814250  T
Q  493 tgagcaattttgattgggagaagagcaattttccttcnnnnnnna-----ggtcgaaaagaggatatttcattcaatgatagcataaaagctagtaatta 587  Q
    |||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8814251 tgagcaattttgattgggagaagagcaattttccttctatttttttttttggtcgaaaagaggatatttcattcaatgatagcataaaagctagtaatta 8814350  T
Q  588 caccatgtgtagaaaactacccactatttgggtaaagtacatagttactgcaaaatctaacaaatacatctcttaagcacatgatttgctcctgacttat 687  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8814351 caccatgtgtagaaaactacccactattggggtaaagtacagagttactgcaaaatctaacaaatacatctcttaagcacatgatttgctcctgacttat 8814450  T
Q  688 tcatctaacatatcatggttacaaagccttcgctaaga 725  Q
     |||||||||||||||||||||||||||||||||||||    
T  8814451 acatctaacatatcatggttacaaagccttcgctaaga 8814488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 312 - 735
Target Start/End: Complemental strand, 7078624 - 7078181
Alignment:
Q  312 ccacgaacttaaatcccgcaactaatgttgatttttaatggagcaaaatcacactttaattcgattatacttgtaacattaacacaaaaattcccctata 411  Q
    |||| |||||||||||| |  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7078624 ccacaaacttaaatcccactgctaatgttgatttttaatggagcaaaaccacactttaattcgattatacttgtaacattaacacaaaaattcccctata 7078525  T
Q  412 actaatgttgattattatcgaacgtgagttaattcatgttggttttat------tg------------ttggagttatttttggtagtttatgtaggaat 493  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||       ||            ||||||||||||||||||||||||||||||||    
T  7078524 actaatgttgattattatcgaacgtgagttaactcatgttggttttaccaaacgtgagttaactcacattggagttatttttggtagtttatgtaggaat 7078425  T
Q  494 gagcaattttgattgggagaagagcaattttccttcnnnnnnna--ggtcgaaaagaggatatttcattcaatgatagcataaaagctagtaattacacc 591  Q
    ||||||||||||||||||||||||||||||||||||          ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  7078424 gagcaattttgattgggagaagagcaattttccttcttttttttttggtcgaaaagatgatatttcattcaatgatagcataaaagctagtgattacacc 7078325  T
Q  592 atgtgtagaaaactacccactatttgggtaaagtacatagttactgcaaaatctaacaaatacatctcttaagcacatgatttgctcctgacttattcat 691  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7078324 atgtgtagaaaactacccactattggggtaaagtacagagttactgcaaaatctaacaaatacatctcttaagcacatgatttgctcctgacttatacat 7078225  T
Q  692 ctaacatatcatggttacaaagccttcgctaagaatgaatatcc 735  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  7078224 ctaacatatcatggttacaaagccttcactaagaatgaatatcc 7078181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 8813621 - 8813926
Alignment:
Q  1 tgtcctatctctaaggtggatataaccctcaatttatgaactagtttctacccatttctccttgtaatgttaattacaaaattattacaaagatagtggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813621 tgtcctatctctaaggtggatataaccctcaatttatgaactagtttcgacccatttctccttgtaatgttaattacaaaattattacaaagatagtggg 8813720  T
Q  101 aaaatatagtactctttgcccaagagatgttgctatatagcatagtcaaaataagaagttggtttctttgcactacgcacttgaaaactttacaaagggg 200  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813721 aaaatata---ctctttgcccaagagatgttgctatatagcatagtcaaaataagaagttggtttctttgcactacgcacttgaaaactttacaaagggg 8813817  T
Q  201 tcactcatgcaccacaaaaatgatgatttggaagggaactattctagactgtcc-aaaagattgttttcaacatgaaaatttgttcttctcccaatcaaa 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8813818 tcactcatgcaccacaaaaatgatgatttggaagggaactattctagactgtccaaaaagattgttttcaacatgaaaatttgttcttctcccaatcaaa 8813917  T
Q  300 attactcat 308  Q
    |||||||||    
T  8813918 attactcat 8813926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 7079054 - 7078750
Alignment:
Q  1 tgtcctatctctaaggtggatataaccctcaatttatgaactagtttctacccatttctccttgtaatgttaattacaaaattattacaaagatagtggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7079054 tgtcctatctctaaggtggatataaccctcaatttatgaactagttttgacccatttctccttgtaatgttaattacaaaattattacaaagatagtggg 7078955  T
Q  101 aaaatatagtactctttgcccaagagatgttgctatatagcatagtcaaaataagaagttggtttctttgcactacgcacttgaaaactttacaaagggg 200  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7078954 aaaatata---ctctttgcccaagagatgttgctatatagcatagtcaaaataagaagttggtttctttgcactacgcacttgaaaactttacaaagggg 7078858  T
Q  201 tcactcatgcaccacaaaaatgatgatttggaagggaactattctagactgtccaaaagattgttttcaacatgaaaatttgttcttctcccaatcaaaa 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7078857 tcactcatgcaccacaaaattgatgatttggaagggaactattctagactgtccaaaagattgttttcaacatgaaaatttgttcttctcccaatcaaaa 7078758  T
Q  301 ttactcat 308  Q
    ||||||||    
T  7078757 ttactcat 7078750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 544 - 613
Target Start/End: Complemental strand, 26360966 - 26360897
Alignment:
Q  544 aaagaggatatttcattcaatgatagcataaaagctagtaattacaccatgtgtag-aaaactacccacta 613  Q
    |||| |||||||||||||||||||||| ||||||||||  |||||| ||||||||| ||||||||||||||    
T  26360966 aaagtggatatttcattcaatgatagcttaaaagctagagattaca-catgtgtagaaaaactacccacta 26360897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 516
Target Start/End: Original strand, 7078719 - 7078774
Alignment:
Q  461 gttggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaaga 516  Q
    |||| ||||||||||| | ||||| || |||||||| |||||||||||||||||||    
T  7078719 gttgaagttatttttgatggtttaggtgggaatgagtaattttgattgggagaaga 7078774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 516
Target Start/End: Complemental strand, 8813957 - 8813902
Alignment:
Q  461 gttggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaaga 516  Q
    |||| ||||||||||| | ||||| || |||||||| |||||||||||||||||||    
T  8813957 gttgaagttatttttgatggtttaggtgggaatgagtaattttgattgggagaaga 8813902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 543 - 666
Target Start/End: Complemental strand, 21968695 - 21968572
Alignment:
Q  543 aaaagaggatatttcattcaatgatagcataaaagctagtaattacaccatgtgtagaaaactacccactatttgggtaaagtacatagttactgcaaaa 642  Q
    |||||||||||||||||| ||||||||  ||||||||| | |||||||||||||||||||||||  ||||||| || |||| |||||| ||| |||| ||    
T  21968695 aaaagaggatatttcatttaatgatagtttaaaagctaatgattacaccatgtgtagaaaactattcactattgggataaaatacataattagtgcagaa 21968596  T
Q  643 tctaacaaatacatctcttaagca 666  Q
    ||||||||||||||||||||||||    
T  21968595 tctaacaaatacatctcttaagca 21968572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 525
Target Start/End: Complemental strand, 31847355 - 31847318
Alignment:
Q  488 aggaatgagcaattttgattgggagaagagcaattttc 525  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  31847355 aggaatgagcaattttgaaagggagaagagcaattttc 31847318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 550 - 706
Target Start/End: Original strand, 42319274 - 42319429
Alignment:
Q  550 gatatttcattcaatgatagcataaaagctagtaattacaccatgtgtagaaaactacccactatttgggtaaagtacatagttactgcaaaatctaaca 649  Q
    ||||||||||||| |||||||  || ||||||| |||||||  ||| ||||||| | | ||||||| |||| |||||||   | ||||||||||| ||||    
T  42319274 gatatttcattcattgatagctaaatagctagtgattacactgtgtatagaaaagtgctcactattggggtcaagtacagcatcactgcaaaatccaaca 42319373  T
Q  650 aatacatctcttaagcacatgatttgctcctgacttattcatctaacatatcatggt 706  Q
    ||||||||  |||| ||   || ||||||||||||||| ||||||||| ||||||||    
T  42319374 aatacatc-attaaacaatagacttgctcctgacttatgcatctaacaaatcatggt 42319429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 626
Target Start/End: Original strand, 41719494 - 41719547
Alignment:
Q  573 aaaagctagtaattacaccatgtgtagaaaactacccactatttgggtaaagta 626  Q
    |||||||||| |||||| ||||| |||||| |||||||||||  ||||||||||    
T  41719494 aaaagctagtgattacatcatgtatagaaacctacccactatcagggtaaagta 41719547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 2470828 - 2470892
Alignment:
Q  460 tgttggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaagagcaatttt 524  Q
    |||||| | |||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  2470828 tgttgggggtattttcggtagcttatgtgggaatgagcaattttgatttggagaagagcaatttt 2470892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 527
Target Start/End: Original strand, 25158250 - 25158311
Alignment:
Q  467 gttatttttggtagtttatg-taggaatgagcaattttgattgggagaagagcaattttcct 527  Q
    ||||||||||||||||| || | ||||||||| | |||||||||||||||| ||||||||||    
T  25158250 gttatttttggtagtttctggtgggaatgagctaatttgattgggagaagaacaattttcct 25158311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 524
Target Start/End: Original strand, 9194355 - 9194400
Alignment:
Q  479 agtttatgtaggaatgagcaattttgattgggagaagagcaatttt 524  Q
    |||| |||| ||| ||||||||||||| ||||||||||||||||||    
T  9194355 agttcatgtgggagtgagcaattttgaatgggagaagagcaatttt 9194400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 489 - 519
Target Start/End: Original strand, 24191000 - 24191030
Alignment:
Q  489 ggaatgagcaattttgattgggagaagagca 519  Q
    |||||||||||||||||||||||||||||||    
T  24191000 ggaatgagcaattttgattgggagaagagca 24191030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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