View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_high_28 (Length: 251)
Name: NF5905_high_28
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 25310400 - 25310552
Alignment:
| Q |
1 |
aacaccttaaatgaagagatttctggatacaatgctcttttgttgc---ctttcttggttggttcatcatgcttatcatcctcattaaaattacccaagt |
97 |
Q |
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| T |
25310400 |
aacaccttaaatgaagaaatttctggatacaatgctcttttgttgcatcctttcttggttggttcatcatgcttatcatcctcattaaaatcacccaagt |
25310499 |
T |
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| Q |
98 |
gctccttatcgctaatcattgacttgcctttttctgcattattgttggttgag |
150 |
Q |
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| T |
25310500 |
gctccttatcactaattattgacttgcctttttctgcattatttttggttgag |
25310552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 25281839 - 25281948
Alignment:
| Q |
1 |
aacaccttaaatgaagagatttctggatacaatgctcttttgttgc---ctttcttggttggttcatcatgcttatcatcctcattaaaattacccaagt |
97 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| || |||||||||| |||||||| |
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| T |
25281839 |
aacaccttaaatgaagagatttcttgatacaatgttcttttgttgcatcctttcttggttgggtcatcatgcttatcgtcttcattaaaatcacccaagt |
25281938 |
T |
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| Q |
98 |
gctccttatc |
107 |
Q |
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|||||||||| |
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| T |
25281939 |
gctccttatc |
25281948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 25282485 - 25282429
Alignment:
| Q |
93 |
caagtgctccttatcgctaatcattgacttgcctttttctgcattattgttggttga |
149 |
Q |
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||||| || |||||| ||||| |||||||||||||||||| ||||| | |||||||| |
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| T |
25282485 |
caagtacttcttatcactaattattgacttgcctttttcttcattagttttggttga |
25282429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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