View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905_high_3 (Length: 678)

Name: NF5905_high_3
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905_high_3
NF5905_high_3
[»] chr5 (15 HSPs)
chr5 (213-374)||(23074469-23074630)
chr5 (14-128)||(23074905-23075019)
chr5 (129-230)||(23074774-23074875)
chr5 (14-83)||(12660434-12660503)
chr5 (15-83)||(4268217-4268285)
chr5 (394-442)||(23074406-23074453)
chr5 (139-200)||(2413220-2413281)
chr5 (147-196)||(2414381-2414430)
chr5 (14-83)||(15988749-15988818)
chr5 (14-83)||(20205073-20205142)
chr5 (14-83)||(25730926-25730995)
chr5 (14-83)||(26597457-26597526)
chr5 (132-189)||(27179135-27179192)
chr5 (14-55)||(34652254-34652295)
chr5 (9-49)||(41940732-41940772)
[»] chr4 (13 HSPs)
chr4 (131-200)||(7982762-7982831)
chr4 (14-83)||(29655666-29655735)
chr4 (14-99)||(55735108-55735196)
chr4 (139-200)||(28910949-28911010)
chr4 (14-83)||(43840306-43840375)
chr4 (14-83)||(49951431-49951500)
chr4 (14-83)||(51259529-51259598)
chr4 (14-83)||(51734972-51735041)
chr4 (14-77)||(18442147-18442210)
chr4 (149-200)||(2357712-2357763)
chr4 (14-77)||(28537787-28537850)
chr4 (14-55)||(37245852-37245893)
chr4 (139-200)||(47806528-47806588)
[»] chr1 (14 HSPs)
chr1 (14-83)||(36733814-36733883)
chr1 (14-83)||(44602870-44602939)
chr1 (132-200)||(14939015-14939083)
chr1 (132-200)||(14944259-14944327)
chr1 (132-200)||(50616292-50616360)
chr1 (132-200)||(50624120-50624188)
chr1 (132-182)||(14949050-14949100)
chr1 (15-77)||(44527377-44527439)
chr1 (132-200)||(18527056-18527124)
chr1 (139-200)||(270628-270689)
chr1 (139-183)||(1547703-1547747)
chr1 (14-54)||(5609486-5609526)
chr1 (147-195)||(42105669-42105717)
chr1 (15-55)||(52109599-52109639)
[»] chr7 (11 HSPs)
chr7 (139-200)||(3868187-3868248)
chr7 (14-83)||(16732051-16732120)
chr7 (14-83)||(17710185-17710254)
chr7 (132-200)||(36718982-36719049)
chr7 (14-83)||(3601770-3601839)
chr7 (14-83)||(29200955-29201024)
chr7 (14-83)||(22289359-22289428)
chr7 (155-200)||(36718252-36718297)
chr7 (15-55)||(16098636-16098676)
chr7 (14-54)||(17877545-17877585)
chr7 (14-54)||(30824494-30824534)
[»] chr6 (2 HSPs)
chr6 (14-83)||(28107257-28107326)
chr6 (14-83)||(14680280-14680349)
[»] chr2 (4 HSPs)
chr2 (139-200)||(35413587-35413648)
chr2 (14-83)||(11292063-11292131)
chr2 (14-75)||(12130638-12130699)
chr2 (14-63)||(35158845-35158894)
[»] chr8 (4 HSPs)
chr8 (132-200)||(16939097-16939165)
chr8 (15-83)||(23854050-23854118)
chr8 (14-83)||(33642764-33642833)
chr8 (14-77)||(185591-185654)
[»] chr3 (1 HSPs)
chr3 (15-77)||(53497156-53497218)
[»] scaffold0922 (1 HSPs)
scaffold0922 (14-83)||(264-333)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 6e-79; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 213 - 374
Target Start/End: Complemental strand, 23074630 - 23074469
Alignment:
Q  213 aaaagcaatttcatataaattaaaatctctcattcaaatcttcacatattctaacaatgttttataaatttgtgtgaagctgaatatttttcgggtgtaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  23074630 aaaagcaatttcatataaattaaaatctctcattcaaatcttcacatattctaacaatgttttataaatttgtgtgaagctgaatatttttctgctgtaa 23074531  T
Q  313 ctagaaaaatcataatttaggatttaaaagattttttgagattaaaaataattattgcatga 374  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23074530 ctagaaaaatcataatttaggatttaaaagatttttttagattaaaaataattattgcatga 23074469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 23075019 - 23074905
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagagatgaattggactcgaatgcaattattgaaa 113  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||    
T  23075019 ataatactataaacaataacatagaattatgaatcaccatggaccgaagacgataaagcttgcactagagatgaattggactcgaaggcaattattggaa 23074920  T
Q  114 aatattttatttgat 128  Q
    |||||||||||||||    
T  23074919 aatattttatttgat 23074905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 23074875 - 23074774
Alignment:
Q  129 attatgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaaatttatcttaataaaagcaatttcatat 228  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  23074875 attatgtgtctaattgggtgattttaattggttgataatgtaaaattgttttacattctcagtctattctaaatttatcttaataaaagcaatttcatat 23074776  T
Q  229 aa 230  Q
    ||    
T  23074775 aa 23074774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 12660503 - 12660434
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| ||||||||| ||||||| | ||| ||||||| |||| |||||||| |||||    
T  12660503 ataatactagaaacaatatcatagaattctgaatcaccgtggcccgaagacgatagagcttgcactagag 12660434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 4268285 - 4268217
Alignment:
Q  15 taatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    ||||||||||||||||| |||||||||  |||||| ||||| ||| |||||||| |||||||| |||||    
T  4268285 taatactagaaacaatagcatagaattccgaatcaccatggcccggagatgatagagcttgcactagag 4268217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 23074453 - 23074406
Alignment:
Q  394 atactaagcaattatgcttaatatgcttcaccaatgatgagttgtttag 442  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  23074453 atactaagcaattatgcttaatatgc-tcaccaatgatgaattgtttag 23074406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 2413281 - 2413220
Alignment:
Q  139 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    ||||||| |||||||||||| | || |||||||| || ||||||||||||| ||||||||||    
T  2413281 taattggatgattttaattgatcgacaatgtaaatttattttacactgtcagtctattctaa 2413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 2414381 - 2414430
Alignment:
Q  147 tgattttaattggttgataatgtaaaattgttttacactgtcactctatt 196  Q
    ||||||||||||||||| |||||||| || ||||||||||||| ||||||    
T  2414381 tgattttaattggttgacaatgtaaacttattttacactgtcagtctatt 2414430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 15988749 - 15988818
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    ||||||||||||||||||||||||||||  |||||| ||||| | ||||| |||| || ||||| |||||    
T  15988749 ataatactagaaacaataacatagaattccgaatcaccatggcctgaagacgatagagattgcactagag 15988818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 20205142 - 20205073
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| ||||||||| ||||||| ||||  ||| ||| |||| |||||||| |||||    
T  20205142 ataatactagaaacaatagcatagaattttgaatcaccatgacccggagaggatagagcttgcactagag 20205073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 25730995 - 25730926
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||||||||||||| | ||||| ||||  ||  ||| |||| |||||||| |||||    
T  25730995 ataatactagaaacaataacatagaattcttaatcaccatgaccctgagacgatagagcttgcactagag 25730926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 26597457 - 26597526
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    ||||||||||||||||||||||| ||||  |||||| ||||| ||| ||| ||||  ||||||| |||||    
T  26597457 ataatactagaaacaataacataaaattccgaatcaccatggcccggagacgatagcgcttgcactagag 26597526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 27179135 - 27179192
Alignment:
Q  132 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtca 189  Q
    |||| ||||||||  ||||||||||| ||||||| ||||||||| ||||||| |||||    
T  27179135 atgtatctaattgaatgattttaattagttgatagtgtaaaattattttacattgtca 27179192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 34652254 - 34652295
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatgg 55  Q
    ||||||||||||||||||||||| |||| ||||||| |||||    
T  34652254 ataatactagaaacaataacatataattctgaatcaccatgg 34652295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 41940732 - 41940772
Alignment:
Q  9 ggtagataatactagaaacaataacatagaattatgaatca 49  Q
    |||| |||||||||||||||||| ||||||||| |||||||    
T  41940732 ggtaaataatactagaaacaatagcatagaattctgaatca 41940772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 7982762 - 7982831
Alignment:
Q  131 tatgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    ||||| |||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||    
T  7982762 tatgtgtctaattgggtgattttaattgattgataatgtaaagttgttttacattgtcagtctattctaa 7982831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 29655666 - 29655735
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||||| |||||    
T  29655666 ataatactagaaacaataacatagaattctgaatcaccatggcccgaagatgatagagcttgcactagag 29655735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 55735196 - 55735108
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattag---agatgaattggactcgaa 99  Q
    |||||||||||||||||| ||||||||| ||||||| ||||| ||||||| |||| |||||||| |||   |||||||| |||||||||    
T  55735196 ataatactagaaacaatagcatagaattctgaatcaccatggtccgaagacgatagagcttgcactagagtagatgaatcggactcgaa 55735108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 28910949 - 28911010
Alignment:
Q  139 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    ||||||| |||||||||| |||||||| |||||| |||||||||||||||| ||||||||||    
T  28910949 taattggatgattttaatcggttgatagtgtaaatttgttttacactgtcagtctattctaa 28911010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 43840306 - 43840375
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| |||||||||  |||||| ||||| ||||||| |||| ||||||||||||||    
T  43840306 ataatactagaaacaatagcatagaattccgaatcaccatggtccgaagacgatagagcttgcattagag 43840375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 49951500 - 49951431
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| || |||||| ||||||| || || ||||||||||||||||||||| |||||    
T  49951500 ataatactagaaacaatagcagagaattctgaatcaccacggcccgaagatgataaagcttgcactagag 49951431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 51259529 - 51259598
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    ||||||||||||||||||||||| |||| ||||||| ||||| ||||||| ||||  ||||||| |||||    
T  51259529 ataatactagaaacaataacataaaattctgaatcaccatggcccgaagacgatagcgcttgcactagag 51259598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 51734972 - 51735041
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| ||||||||||||||||| ||||| ||  ||| |||| |||||||| |||||    
T  51734972 ataatactagaaacaatatcatagaattatgaatcaccatggtccagagacgatagagcttgcactagag 51735041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 18442147 - 18442210
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgca 77  Q
    |||||||||||||||||| ||||||||| ||||||| ||||| || |||| |||| ||||||||    
T  18442147 ataatactagaaacaatagcatagaattctgaatcaccatgggccaaagacgatatagcttgca 18442210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 2357763 - 2357712
Alignment:
Q  149 attttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    ||||||||||||||||| | |||| |||||||||||||| | ||||||||||    
T  2357763 attttaattggttgatagtctaaagttgttttacactgttagtctattctaa 2357712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 28537787 - 28537850
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgca 77  Q
    |||||||||||||||||| ||||||||| ||||||| ||||| ||  ||| |||| ||||||||    
T  28537787 ataatactagaaacaatagcatagaattttgaatcaccatggcccagagacgatagagcttgca 28537850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 37245852 - 37245893
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatgg 55  Q
    |||||||||||||||||| ||||||||| ||||||| |||||    
T  37245852 ataatactagaaacaatagcatagaattctgaatcaccatgg 37245893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 47806588 - 47806528
Alignment:
Q  139 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    |||||| ||||||||||||||||||   |||||| ||||||||| |||||| ||||||||||    
T  47806588 taattgagtgattttaattggttgacggtgtaaa-ttgttttacgctgtcagtctattctaa 47806528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 36733883 - 36733814
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||| |||||    
T  36733883 ataatactagaaacaataacatagaattatgaatcatcatggcccggagacgatatagcttgcactagag 36733814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 44602939 - 44602870
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| ||||||||| ||||||| ||||| ||| |||||||| |||||||| |||||    
T  44602939 ataatactagaaacaatagcatagaattttgaatcaccatggcccggagatgatagagcttgcactagag 44602870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 14939083 - 14939015
Alignment:
Q  132 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    |||| ||||||||  ||||||||||| ||||||| ||||||||||||||||| ||||  ||||||||||    
T  14939083 atgtgtctaattgtatgattttaattagttgatagtgtaaaattgttttacattgtcgatctattctaa 14939015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 14944327 - 14944259
Alignment:
Q  132 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    |||| ||||||||  ||||||||||| ||||||| ||||||||||||||||| ||||  ||||||||||    
T  14944327 atgtgtctaattgtatgattttaattagttgatagtgtaaaattgttttacattgtcgatctattctaa 14944259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 50616292 - 50616360
Alignment:
Q  132 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    |||| ||||||| | ||||||||||||||||||| |||||| |||||||||||| ||| | ||||||||    
T  50616292 atgtgtctaatttgatgattttaattggttgatagtgtaaagttgttttacactatcaatttattctaa 50616360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 50624120 - 50624188
Alignment:
Q  132 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    |||| ||||||| | ||||||||||||||||||| |||||| |||||||||||| ||| | ||||||||    
T  50624120 atgtgtctaatttgatgattttaattggttgatagtgtaaagttgttttacactatcaatttattctaa 50624188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 14949100 - 14949050
Alignment:
Q  132 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttac 182  Q
    |||| ||||||||  ||||||||||| ||||||||||||||||||||||||    
T  14949100 atgtgtctaattgtatgattttaattagttgataatgtaaaattgttttac 14949050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 44527439 - 44527377
Alignment:
Q  15 taatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgca 77  Q
    ||||||||||||||||| |||||||||  |||||| ||||| ||| |||||||| ||||||||    
T  44527439 taatactagaaacaatagcatagaattccgaatcaccatggcccggagatgatagagcttgca 44527377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 18527124 - 18527056
Alignment:
Q  132 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    |||| ||||||||  ||||||||||||||||||| |||||| ||||||  |||||| | ||||||||||    
T  18527124 atgtgtctaattgaatgattttaattggttgatagtgtaaagttgtttcgcactgttagtctattctaa 18527056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 270628 - 270689
Alignment:
Q  139 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    ||||||| |||||||||||| |||||| |||||| || |||||||| || | ||||||||||    
T  270628 taattggatgattttaattgtttgatagtgtaaacttattttacaccgttagtctattctaa 270689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 1547747 - 1547703
Alignment:
Q  139 taattgggtgattttaattggttgataatgtaaaattgttttaca 183  Q
    |||||| ||||||||||||| |||||| |||||| ||||||||||    
T  1547747 taattgagtgattttaattgattgatagtgtaaagttgttttaca 1547703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 5609526 - 5609486
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatg 54  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  5609526 ataatactagaaacaatagcatagaattctgaatcaccatg 5609486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 42105717 - 42105669
Alignment:
Q  147 tgattttaattggttgataatgtaaaattgttttacactgtcactctat 195  Q
    ||||||||||||||||| | |||||| |||||||||| ||||| |||||    
T  42105717 tgattttaattggttgacagtgtaaacttgttttacattgtcagtctat 42105669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 52109639 - 52109599
Alignment:
Q  15 taatactagaaacaataacatagaattatgaatcatcatgg 55  Q
    |||||||||||||||||||||||||||  |||||| |||||    
T  52109639 taatactagaaacaataacatagaattccgaatcaccatgg 52109599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 3868248 - 3868187
Alignment:
Q  139 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    ||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  3868248 taatttggtgattttaattggttgatagtgcaaaattgttttacactgtcagtctattctaa 3868187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 16732120 - 16732051
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| || |||||| ||||||| ||||| ||| |||||||| |||||||| |||||    
T  16732120 ataatactagaaacaatagcagagaattctgaatcaccatggcccggagatgatagagcttgcactagag 16732051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 17710254 - 17710185
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| || |||||| ||||||| ||||| ||| |||||||| |||||||| |||||    
T  17710254 ataatactagaaacaatagcagagaattctgaatcaccatggcccggagatgatagagcttgcactagag 17710185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 36718982 - 36719049
Alignment:
Q  132 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    |||| ||||||||| ||| ||||||||||||||  ||||||||||||||||| ||||| ||||||||||    
T  36718982 atgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttaca-tgtcagtctattctaa 36719049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 3601839 - 3601770
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| |||| |||| ||||||| ||||| ||  ||| ||||||||||||| |||||    
T  3601839 ataatactagaaacaatagcataaaattctgaatcaccatggtccagagacgataaagcttgcactagag 3601770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 29200955 - 29201024
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| ||||||||| ||||||| ||||| ||  ||| |||| |||||||| |||||    
T  29200955 ataatactagaaacaatagcatagaattctgaatcaccatggcccagagacgatagagcttgcactagag 29201024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 22289428 - 22289359
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| |||| |||| ||||||| ||||| ||| ||| ||||  ||||||| |||||    
T  22289428 ataatactagaaacaatagcataaaattctgaatcaccatggcccggagacgatagcgcttgcactagag 22289359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 36718297 - 36718252
Alignment:
Q  155 attggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    ||||||||||  ||||||||||||||||| ||||| ||||||||||    
T  36718297 attggttgatggtgtaaaattgttttacaatgtcagtctattctaa 36718252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 16098676 - 16098636
Alignment:
Q  15 taatactagaaacaataacatagaattatgaatcatcatgg 55  Q
    ||||||||||||||||| ||||||||| ||||||| |||||    
T  16098676 taatactagaaacaatatcatagaattctgaatcaccatgg 16098636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 17877585 - 17877545
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatg 54  Q
    |||||||||||||||||| |||||||||| |||||| ||||    
T  17877585 ataatactagaaacaatagcatagaattacgaatcaccatg 17877545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 30824494 - 30824534
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatg 54  Q
    |||| ||||||||||||||||||||||| ||||||| ||||    
T  30824494 ataagactagaaacaataacatagaattctgaatcaccatg 30824534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 28107326 - 28107257
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||| ||| |||| |||||||| |||||    
T  28107326 ataatactagaaacaataacatagaattctgaatcaccatggcccggagacgatagagcttgcactagag 28107257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 14680349 - 14680280
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| || |||||| ||||||| ||  | ||| |||||||| |||||||| |||||    
T  14680349 ataatactagaaacaatagcagagaattttgaatcaccactgcccggagatgatagagcttgcaatagag 14680280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 35413648 - 35413587
Alignment:
Q  139 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    ||||||| ||| ||||||||||||||| |||||| |||||||||||||| | ||||||||||    
T  35413648 taattggatgaatttaattggttgatagtgtaaagttgttttacactgttagtctattctaa 35413587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 11292063 - 11292131
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    ||||||||| ||||||||||||| |||| ||||||||||||| ||||| | |||| |||||||| |||||    
T  11292063 ataatactataaacaataacataaaattttgaatcatcatgg-ccgaaaacgatagagcttgcactagag 11292131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 12130638 - 12130699
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttg 75  Q
    ||||||||||||| |||| ||||||||| ||||||| ||||  |||||||||||| ||||||    
T  12130638 ataatactagaaataatagcatagaattctgaatcaccatgtcccgaagatgatagagcttg 12130699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 35158845 - 35158894
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaaga 63  Q
    |||||| ||||||||||| ||||||||| ||||||||||||| |||||||    
T  35158845 ataataatagaaacaatagcatagaattctgaatcatcatggcccgaaga 35158894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 16939097 - 16939165
Alignment:
Q  132 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 200  Q
    |||| |||||||  |||||||||||||||||| | ||||||||||||||||||| ||  ||||||||||    
T  16939097 atgtgtctaatttagtgattttaattggttgacagtgtaaaattgttttacactatcgatctattctaa 16939165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 23854118 - 23854050
Alignment:
Q  15 taatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    ||||||||||||||||| ||||||||| ||||||| ||||| ||| ||| |||| |||||||| |||||    
T  23854118 taatactagaaacaatagcatagaattctgaatcaccatggcccggagacgatagagcttgcactagag 23854050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 33642764 - 33642833
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| ||| ||||| ||||||| ||||| ||| ||| || | ||||||||||||||    
T  33642764 ataatactagaaacaatatcattgaattctgaatcaccatggcccggagacgacagagcttgcattagag 33642833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 185591 - 185654
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgca 77  Q
    |||||||||||||||||| ||||||||| ||||||| ||||| ||| ||| || | ||||||||    
T  185591 ataatactagaaacaatagcatagaattctgaatcaccatggtccggagacgaaagagcttgca 185654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 53497218 - 53497156
Alignment:
Q  15 taatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgca 77  Q
    ||||||||||||||||| |||||||||  |||||| ||||| ||| ||| |||| ||||||||    
T  53497218 taatactagaaacaatagcatagaattccgaatcaccatggcccggagacgatagagcttgca 53497156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 264 - 333
Alignment:
Q  14 ataatactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 83  Q
    |||||||||||||||||| ||||||||| ||||| | ||||  | | |||||||| |||||||| |||||    
T  264 ataatactagaaacaatagcatagaattctgaattaccatgacctggagatgatagagcttgcactagag 333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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